{
  "_id": "6a1947f8acfb0bcc41dda8c8",
  "Package": "DNABarcodes",
  "Type": "Package",
  "Title": "A tool for creating and analysing DNA barcodes used in Next\nGeneration Sequencing multiplexing experiments",
  "Version": "1.42.0",
  "Date": "2014-07-23",
  "Author": "Tilo Buschmann <tilo.buschmann.ac@gmail.com>",
  "Maintainer": "Tilo Buschmann <tilo.buschmann.ac@gmail.com>",
  "Description": "The package offers a function to create DNA barcode sets\ncapable of correcting insertion, deletion, and substitution\nerrors. Existing barcodes can be analysed regarding their\nminimal, maximal and average distances between barcodes.\nFinally, reads that start with a (possibly mutated) barcode can\nbe demultiplexed, i.e., assigned to their original reference\nbarcode.",
  "License": "GPL-2",
  "VignetteBuilder": "knitr",
  "biocViews": "Preprocessing, Sequencing",
  "NeedsCompilation": "yes",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:35 UTC",
  "RemoteUrl": "https://github.com/bioc/DNABarcodes",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "e6484eaedfb42f8e1507a9719247e13234053ca8",
  "Packaged": {
    "Date": "2026-05-29 06:56:05 UTC",
    "User": "root"
  },
  "MD5sum": "ff27da31946e515d449f1d2416cd9197",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "DNABarcodes_1.42.0.tar.gz",
  "_fileid": "4a7e4c88696c8f0a6b48968d790e9854d68305ba2aa08ed667bf971e8a599bdd",
  "_filesize": 293712,
  "_sha256": "4a7e4c88696c8f0a6b48968d790e9854d68305ba2aa08ed667bf971e8a599bdd",
  "_created": "2026-05-29T06:56:05.000Z",
  "_published": "2026-05-29T08:02:00.801Z",
  "_jobs": [
    {
      "job": 78453111077,
      "time": 171,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7284937726"
    },
    {
      "job": 78453111130,
      "time": 169,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7284937367"
    },
    {
      "job": 78453111148,
      "time": 263,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7284959581"
    },
    {
      "job": 78453111133,
      "time": 178,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284939538"
    },
    {
      "job": 78453111135,
      "time": 212,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284947310"
    },
    {
      "job": 78453111142,
      "time": 126,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7285887159"
    },
    {
      "job": 78453111123,
      "time": 266,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7285927191"
    },
    {
      "job": 78453111151,
      "time": 148,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7285897316"
    },
    {
      "job": 78453111137,
      "time": 389,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7285963369"
    },
    {
      "job": 78452632601,
      "time": 244,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284897773"
    },
    {
      "job": 78453111094,
      "time": 162,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284935971"
    },
    {
      "job": 78453111124,
      "time": 236,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7284953186"
    },
    {
      "job": 78453111138,
      "time": 208,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7284946100"
    },
    {
      "job": 78453111134,
      "time": 239,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284954535"
    }
  ],
  "_bioccheck": {
    "error": 3,
    "warning": 4,
    "note": 9
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/DNABarcodes",
  "_commit": {
    "id": "e6484eaedfb42f8e1507a9719247e13234053ca8",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777381415
  },
  "_maintainer": {
    "name": "Tilo Buschmann",
    "email": "tilo.buschmann.ac@gmail.com",
    "login": "tilo-buschmann",
    "description": "",
    "uuid": 6060510
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Matrix",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "BH",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.11.2",
      "role": "Imports"
    },
    {
      "package": "BH",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.43.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.42.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "preprocessing",
    "sequencing",
    "cpp",
    "openmp"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 556,
    "source": "https://www.bioconductor.org/packages/stats/bioc/DNABarcodes"
  },
  "_mentions": 3,
  "_searchresults": 41,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DNABarcodes.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "analyse.barcodes",
    "barcode.set.distances",
    "create.dnabarcodes",
    "create.dnabarcodes.ashlock",
    "create.dnabarcodes.clique",
    "create.dnabarcodes.conway",
    "create.dnabarcodes.sampling",
    "create.pool",
    "demultiplex",
    "distance"
  ],
  "_datasets": [
    {
      "name": "mutatedReads",
      "title": "Mock Set of Mutated Reads",
      "object": "mutatedReads",
      "file": "mutatedReads.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "supplierSet",
      "title": "Mock Set of DNA Barcodes",
      "object": "supplierSet",
      "file": "supplierSet.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "DNABarcodes-package",
      "title": "Create and analyse DNA barcode sets that are capable of error correction.",
      "concept": [
        "Error Correction",
        "DNA Barcodes",
        "Sample Tags",
        "Levenshtein Distance",
        "Hamming Distance",
        "Next Generation Sequencing",
        "Multiplexing",
        "Demultiplexing"
      ],
      "topics": [
        "DNABarcodes-package",
        "DNABarcodes"
      ]
    },
    {
      "page": "analyse.barcodes",
      "title": "Analyse Sets of Barcode",
      "topics": [
        "analyse.barcodes"
      ]
    },
    {
      "page": "barcode.set.distances",
      "title": "Calculate distances between each barcode pair of a barcode set.",
      "topics": [
        "barcode.set.distances"
      ]
    },
    {
      "page": "create.dnabarcodes",
      "title": "Create a set of DNA barcodes using one of several heuristic methods.",
      "topics": [
        "create.dnabarcodes",
        "create.dnabarcodes.ashlock",
        "create.dnabarcodes.clique",
        "create.dnabarcodes.conway",
        "create.dnabarcodes.sampling"
      ]
    },
    {
      "page": "create.pool",
      "title": "Create a pool of barcode candidates.",
      "topics": [
        "create.pool"
      ]
    },
    {
      "page": "demultiplex",
      "title": "Demultiplex a set of reads.",
      "topics": [
        "demultiplex"
      ]
    },
    {
      "page": "distance",
      "title": "Calculate distance between two barcodes.",
      "topics": [
        "distance"
      ]
    },
    {
      "page": "mutatedReads",
      "title": "Mock Set of Mutated Reads",
      "topics": [
        "mutatedReads"
      ]
    },
    {
      "page": "supplierSet",
      "title": "Mock Set of DNA Barcodes",
      "topics": [
        "supplierSet"
      ]
    }
  ],
  "_rundeps": [
    "BH",
    "lattice",
    "Matrix",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "DNABarcodes.Rmd",
      "filename": "DNABarcodes.html",
      "title": "DNABarcodes",
      "engine": "knitr::rmarkdown",
      "headings": [
        "DNABarcodes",
        "Using DNABarcodes",
        "Creating a Pristine Set of DNA Barcodes",
        "Sets with Larger Number of Correctable Errors",
        "Sets of DNA Barcodes Capable of Correcting Insertions, Deletions, and Substitutions",
        "Applying Different Filters",
        "Subsetting an Existing Set of DNA Barcodes",
        "Demultiplexing",
        "Analysing a Set of DNA Barcodes",
        "Distance Metrics",
        "Set Generation Heuristics",
        "Configuration of Ashlock Heuristic"
      ],
      "created": "2015-09-28 14:38:37",
      "modified": "2015-09-28 14:38:37",
      "commits": 1
    }
  ],
  "_score": 4.390935107103379,
  "_indexed": false,
  "_nocasepkg": "dnabarcodes",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/DNABarcodes",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.42.0",
      "date": "2026-05-29T06:58:47.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "2f9b39d2158a5932115af86cb41298e1ed2dc0db61fecb3f0c17bbe59f14979f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.42.0",
      "date": "2026-05-29T07:00:11.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "43bb34bf4e9698af8100faf5449fcdf9192e381e5160ccca5e8c3371d648d306",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.42.0",
      "date": "2026-05-29T06:58:54.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "5c97ba86a142eebbf802c38719f044c375f63667401bb0815587298baa9dd1d3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.42.0",
      "date": "2026-05-29T06:59:34.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "f9968475646903554d5846020ae4dbac0aa4005f8afee8ef94da6ce6bd8a5e8e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.42.0",
      "date": "2026-05-29T07:56:15.000Z",
      "arch": "aarch64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "b406f109354afa3be4b2c5fb66c8302ef869df1dc3d9de5f0eabfdaec5e49170",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.42.0",
      "date": "2026-05-29T07:57:42.000Z",
      "arch": "x86_64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "d286c49d42ca942e8983ed3ea71242022e4eca999d2c52613b621e59e025b468",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.42.0",
      "date": "2026-05-29T07:56:45.000Z",
      "arch": "aarch64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "ca59b2c3889dcb19134b3be45569ce204b52278b2df2ccfcb3e2f24604dc4b29",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.42.0",
      "date": "2026-05-29T07:59:05.000Z",
      "arch": "x86_64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "62402c799254cff544d60fd6104271c06d52c4dad0831800c9c497a15de7df3b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.42.0",
      "date": "2026-05-29T06:58:52.000Z",
      "arch": "emscripten",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "71c4754196706429d62e135c3a952f70654844ac7321250474522db8c7e1d97b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.42.0",
      "date": "2026-05-29T06:58:59.000Z",
      "arch": "x86_64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "71a5b010931af09a10bfe7f8c6d81e5dbec365865b188363d6d844ae92c95957",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.42.0",
      "date": "2026-05-29T06:58:23.000Z",
      "arch": "x86_64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "fbb79b975fb717e3ebc52fccef464ec0cadf526aa15206f394f74f3b769f33a7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.42.0",
      "date": "2026-05-29T06:58:27.000Z",
      "arch": "x86_64",
      "commit": "e6484eaedfb42f8e1507a9719247e13234053ca8",
      "fileid": "871199570d280ce341a202de709ea3fb605e2617b537ba2a055a31da66d319bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622861277"
    }
  ]
}