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  "Title": "Dispersion shrinkage for sequencing data",
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  "Date": "2026-4-9",
  "Author": "Hao Wu<hao.wu@emory.edu>, Hao Feng<hxf155@case.edu>",
  "Maintainer": "Hao Wu <hao.wu@emory.edu>, Hao Feng <hxf155@case.edu>",
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      "title": "Dispersion shrinkage for sequencing data",
      "topics": [
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        "DSS"
      ]
    },
    {
      "page": "callDML",
      "title": "Function to detect differntially methylated loci (DML) from bisulfite sequencing (BS-seq) data.",
      "topics": [
        "callDML"
      ]
    },
    {
      "page": "callDMR",
      "title": "Function to detect differntially methylated regions (DMR) from bisulfite sequencing (BS-seq) data.",
      "topics": [
        "callDMR"
      ]
    },
    {
      "page": "design",
      "title": "Experimental design for the example RRBS dataset",
      "topics": [
        "design"
      ]
    },
    {
      "page": "dispersion",
      "title": "Acessor functions for the 'dispersion' slot in a SeqCountData object.",
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        "dispersion,SeqCountSet-method",
        "dispersion<-",
        "dispersion<-,SeqCountSet,numeric-method"
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      "topics": [
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    },
    {
      "page": "DMLtest",
      "title": "Function to perform statistical test of differntially methylated loci (DML) for two group comparisons of bisulfite sequencing (BS-seq) data.",
      "topics": [
        "DMLtest"
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      "title": "Perform RNA-seq differential expression analysis in two-group comparison",
      "topics": [
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        "estNormFactors,SeqCountSet-method"
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        "normalizationFactor<-,SeqCountSet,matrix-method",
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    {
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        "SeqCountSet",
        "SeqCountSet-class"
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    },
    {
      "page": "seqData",
      "title": "A simulated 'SeqCountData' object.",
      "topics": [
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      "title": "Visualze the count data for one DMR",
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    {
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        "Using DSS for BS-seq differential methylation analysis",
        "Overview",
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        "Parallel computing for DML/DMR detection from two-group comparison",
        "DML/DMR detection from general experimental design",
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