{
  "_id": "6a22713dcd65a98ecbd49021",
  "Package": "EBarrays",
  "Version": "2.76.0",
  "Date": "2007/09/20",
  "Title": "Unified Approach for Simultaneous Gene Clustering and\nDifferential Expression Identification",
  "Author": "Ming Yuan, Michael Newton, Deepayan Sarkar and Christina\nKendziorski",
  "Maintainer": "Ming Yuan <myuan@isye.gatech.edu>",
  "Description": "EBarrays provides tools for the analysis of\nreplicated/unreplicated microarray data.",
  "License": "GPL (>= 2)",
  "biocViews": "Clustering, DifferentialExpression",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:30:29 UTC",
  "RemoteUrl": "https://github.com/bioc/EBarrays",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-05 06:42:46 UTC",
    "User": "root"
  },
  "MD5sum": "23da24285bd96aac2016e42177c26635",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "EBarrays_2.76.0.tar.gz",
  "_fileid": "92d7041e9ba57f4e3963dabfd38902add07288d2e0fbee3211bf0f021edd64e6",
  "_filesize": 1084008,
  "_sha256": "92d7041e9ba57f4e3963dabfd38902add07288d2e0fbee3211bf0f021edd64e6",
  "_created": "2026-06-05T06:42:46.000Z",
  "_published": "2026-06-05T06:48:29.109Z",
  "_jobs": [
    {
      "job": 79677717459,
      "time": 132,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7430471504"
    },
    {
      "job": 79677717446,
      "time": 139,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7430473702"
    },
    {
      "job": 79677717465,
      "time": 143,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7430474309"
    },
    {
      "job": 79677717544,
      "time": 157,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430478313"
    },
    {
      "job": 79677717539,
      "time": 159,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430478440"
    },
    {
      "job": 79677717441,
      "time": 99,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7430463550"
    },
    {
      "job": 79677717475,
      "time": 218,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7430492270"
    },
    {
      "job": 79677717452,
      "time": 107,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430466480"
    },
    {
      "job": 79677717467,
      "time": 306,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430512746"
    },
    {
      "job": 79677431774,
      "time": 143,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430439490"
    },
    {
      "job": 79677717404,
      "time": 86,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430460724"
    },
    {
      "job": 79677717445,
      "time": 122,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7430469059"
    },
    {
      "job": 79677717444,
      "time": 94,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7430462418"
    },
    {
      "job": 79677717470,
      "time": 91,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430461875"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 4,
    "note": 14
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/EBarrays",
  "_commit": {
    "id": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379429
  },
  "_maintainer": {
    "name": "Ming Yuan",
    "email": "myuan@isye.gatech.edu"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 1.8.0",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Depends"
    },
    {
      "package": "lattice",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "cluster",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "lattice",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 6,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "2.77.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "2.76.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "clustering",
    "differentialexpression"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 658,
    "source": "https://www.bioconductor.org/packages/stats/bioc/EBarrays"
  },
  "_mentions": 26,
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EBarrays.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "checkCCV",
    "checkModel",
    "checkVarsMar",
    "checkVarsQQ",
    "crit.fun",
    "eb.createFamilyGG",
    "eb.createFamilyLNN",
    "eb.createFamilyLNNMV",
    "ebPatterns",
    "emfit",
    "emfit0",
    "emfit1",
    "emfit2",
    "emfit3",
    "emfitmv",
    "plot.ebarraysEMfit",
    "plotCluster",
    "plotMarginal",
    "postprob"
  ],
  "_datasets": [
    {
      "name": "gould",
      "title": "A dataset of class matrix",
      "object": "gould",
      "file": "gould.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "CopK759",
        "WFK759",
        "WFK842.12",
        "CopN9CK758.1",
        "CopN9CK758.2",
        "CopN9CK842.3",
        "CopN9EK842.5",
        "CopN9EK842.4",
        "CopN11XK842.10",
        "CopN11XK842.11"
      ],
      "rows": 5000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "crit.fun",
      "title": "Find posterior probability threshold to control FDR",
      "topics": [
        "crit.fun"
      ]
    },
    {
      "page": "ebarraysFamily-class",
      "title": "Class of Families to be used in the EBarrays package",
      "topics": [
        "coerce,character,ebarraysFamily-method",
        "eb.createFamilyGG",
        "eb.createFamilyLNN",
        "eb.createFamilyLNNMV",
        "ebarraysFamily-class",
        "show,ebarraysFamily-method"
      ]
    },
    {
      "page": "ebplots",
      "title": "Various plotting routines in the EBarrays package",
      "topics": [
        "checkCCV",
        "checkModel",
        "checkVarsMar",
        "checkVarsQQ",
        "ebplots",
        "plot.ebarraysEMfit",
        "plotCluster",
        "plotMarginal"
      ]
    },
    {
      "page": "emfit",
      "title": "Implements EM algorithm for gene expression mixture model",
      "topics": [
        "ebarraysEMfit-class",
        "emfit",
        "emfit,ExpressionSet,character,ebarraysPatterns-method",
        "emfit,ExpressionSet,ebarraysFamily,ebarraysPatterns-method",
        "emfit,matrix,character,ebarraysPatterns-method",
        "emfit,matrix,ebarraysFamily,ebarraysPatterns-method",
        "show,ebarraysEMfit-method"
      ]
    },
    {
      "page": "gould",
      "title": "A dataset of class matrix",
      "topics": [
        "gould"
      ]
    },
    {
      "page": "postprob",
      "title": "Calculates posterior probabilities for expression patterns",
      "topics": [
        "ebarraysPostProb-class",
        "postprob",
        "postprob,ebarraysEMfit,ExpressionSet-method",
        "postprob,ebarraysEMfit,matrix-method",
        "show,ebarraysPostProb-method"
      ]
    },
    {
      "page": "utilities",
      "title": "Utility functions for the EBarrays package",
      "topics": [
        "ebarraysPatterns-class",
        "ebPatterns",
        "show,ebarraysPatterns-method",
        "utilities"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "cluster",
    "generics",
    "lattice"
  ],
  "_vignettes": [
    {
      "source": "vignette.Rnw",
      "filename": "vignette.pdf",
      "title": "Introduction to EBarrays",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 19:50:49",
      "modified": "2013-11-01 19:50:49",
      "commits": 1
    }
  ],
  "_score": 5.556302500767288,
  "_indexed": false,
  "_nocasepkg": "ebarrays",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/EBarrays",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.76.0",
      "date": "2026-06-05T06:45:00.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "f60b3028722bf92b2bc9db48925de88422979241333b038692a045dd14ebef27",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.76.0",
      "date": "2026-06-05T06:44:59.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "95fa592e5c8f33e31aa1fd78f3c26fba6a84bd04c24bc38cd43bd9791b166e26",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.76.0",
      "date": "2026-06-05T06:45:18.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "0970d5ad414442cd5d64d07ab9cb71582d742cf0e5b73b538b2980544898d65c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.76.0",
      "date": "2026-06-05T06:45:16.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "b3aa5bb7d32cd12a1e55f8ecc4a2df008f958c03bbfb92e7756976ab394053bc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.76.0",
      "date": "2026-06-05T06:44:20.000Z",
      "arch": "aarch64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "716921005970d2b6bb1cc1261e17bcee45415f3643fcf5f2ecb971ed62a26af6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.76.0",
      "date": "2026-06-05T06:45:52.000Z",
      "arch": "x86_64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "27b7d8faff9b241c237a0a1311442180495d79f3b42dadae5e88c6537e8b29be",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.76.0",
      "date": "2026-06-05T06:44:31.000Z",
      "arch": "aarch64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "8e17465f2761f4cff4b15e929785b49fc93a49d7922bddfd18280808d4bb14d0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.76.0",
      "date": "2026-06-05T06:47:03.000Z",
      "arch": "x86_64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "9efb88c90f28e1b328581dbacb7fc678ab7b2177c7d6d65a1264c0240e6cc1e3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.76.0",
      "date": "2026-06-05T06:44:28.000Z",
      "arch": "emscripten",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "70fb7d36ed7a57ed62feef6bb14b973f8abc3582769791d94f433d9576cdcff8",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.76.0",
      "date": "2026-06-05T06:44:21.000Z",
      "arch": "x86_64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "513601153a0da9e57d75c9f3fb4c2f3108ff9a8029a18a3235a49e73ca2f9299",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.76.0",
      "date": "2026-06-05T06:43:51.000Z",
      "arch": "x86_64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "705470221615d2bfe101d9dd91b0f0878082d6c7e117fd4b277739eee1d6022d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.76.0",
      "date": "2026-06-05T06:43:52.000Z",
      "arch": "x86_64",
      "commit": "2f2b4945cf3a771e7f83deacddec7a490e7d569a",
      "fileid": "09255b84c284aa0916739971c18b21fbcdb71a24046007d52c805e01d9d87098",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999785593"
    }
  ]
}