{ "_id": "6aca1ff9fe5cc25786e84f77", "Package": "EGSEAdata", "Title": "Gene set collections for the EGSEA package", "Version": "1.40.0", "Date": "15-03-2017", "Author": "Monther Alhamdoosh, Yifang Hu and Gordon K. Smyth", "Maintainer": "Monther Alhamdoosh ", "Description": "This package includes gene set collections that are used\nfor the Ensemble of Gene Set Enrichment Analyses (EGSEA) method\nfor gene set testing. It includes Human and Mouse versions of\nthe MSidDB (Subramanian, et al. (2005) PNAS,\n102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS\nOpen Bio, 2:76-82) collections.", "biocViews": "ExperimentData, Homo_sapiens_Data, Mus_musculus_Data,\nRattus_norvegicus_Data", "License": "file LICENSE", "LazyLoad": "yes", "NeedsCompilation": "no", "RoxygenNote": "5.0.1", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:29:49 UTC", "RemoteUrl": "https://github.com/bioc/EGSEAdata", "RemoteRef": "RELEASE_3_23", "RemoteSha": "5ef6b3a8065ed682de59de12d0daee07d37109af", "Packaged": { "Date": "2026-10-10 11:12:09 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "EGSEAdata_1.40.0.tar.gz", "_fileid": "https://r2.ropensci.org/390c278962fedc3e0faa967231bc621272e7e3173c24be8dc639e85af9308c9d", "_filesize": 50209563, "_sha256": "390c278962fedc3e0faa967231bc621272e7e3173c24be8dc639e85af9308c9d", "_expires": "2027-01-18T11:22:28.000Z", "_created": "2026-10-10T11:12:09.000Z", "_published": "2026-10-10T11:22:33.013Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047227574", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 1, "note": 11 }, "_upstream": "https://github.com/bioc/EGSEAdata", "_commit": { "id": "5ef6b3a8065ed682de59de12d0daee07d37109af", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379389 }, "_maintainer": { "name": "Monther Alhamdoosh", "email": "m.hamdoosh@gmail.com", "login": "malhamdoosh", "linkedin": "in/malhamdoosh", "description": "This is the official account of Dr Monther Alhamdoosh's R&D Lab. ", "uuid": 6373094 }, "_distro": "resolute", "_jobs": [ { "job": 114200674961, "time": 258, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11668481337" }, { "job": 114200674973, "time": 392, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11667793598" }, { "job": 114200674946, "time": 380, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11668861112" }, { "job": 114199148836, "time": 534, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667832419" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4", "role": "Depends" }, { "package": "EGSEA", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 2, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.41.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.40.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "homo_sapiens_data", "mus_musculus_data", "rattus_norvegicus_data", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 40, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/EGSEAdata.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "LICENSE" ], "_cranurl": false, "_exports": [ "egsea.data" ], "_datasets": [ { "name": "gsetdb.human", "title": "GeneSetDB Human Collections", "object": "gsetdb.human", "file": "gsetdb.human.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "gsetdb.mouse", "title": "GeneSetDB Mouse Collections", "object": "gsetdb.mouse", "file": "gsetdb.mouse.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "gsetdb.rat", "title": "GeneSetDB Rat Collections", "object": "gsetdb.rat", "file": "gsetdb.rat.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "il13.data", "title": "Human IL-13 dataset", "object": "il13.data", "file": "il13.data.cnt.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "il13.data.cnt", "title": "Human IL-13 dataset - Raw Counts", "object": "il13.data.cnt", "file": "il13.data.cnt.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "il13.gsa", "title": "EGSEA analysis results on the human IL-13 dataset", "object": "il13.gsa", "file": "il13.gsa.rda", "class": [ "EGSEAResults" ], "fields": [], "table": false, "tojson": false }, { "name": "kegg.pathways", "title": "KEGG Pathways Collections", "object": "kegg.pathways", "file": "kegg.pathways.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "mam.data", "title": "Mouse mammary cell dataset", "object": "mam.data", "file": "mam.data.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Mm.c2", "title": "Mouse C2 MSigDB Gene Set Collections", "object": "Mm.c2", "file": "Mm.c2.rdata", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Mm.c3", "title": "Mouse C3 MSigDB Gene Set Collections", "object": "Mm.c3", "file": "Mm.c3.rdata", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Mm.c4", "title": "Mouse C4 MSigDB Gene Set Collections", "object": "Mm.c4", "file": "Mm.c4.rdata", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Mm.c5", "title": "Mouse C5 MSigDB Gene Set Collections", "object": "Mm.c5", "file": "Mm.c5.rdata", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Mm.c6", "title": "Mouse C6 MSigDB Gene Set Collections", "object": "Mm.c6", "file": "Mm.c6.rdata", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Mm.c7", "title": "Mouse C7 MSigDB Gene Set Collections", "object": "Mm.c7", "file": "Mm.c7.rdata", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "Mm.H", "title": "Mouse H MSigDB Gene Set Collections", "object": "Mm.H", "file": "Mm.H.rdata", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "msigdb", "title": "MSigDB Gene Set Collections", "object": "msigdb", "file": "msigdb.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "EGSEAdata-package", "title": "Gene Set Collections for the EGSEA package", "topics": [ "EGSEAdata-package", "EGSEAdata" ] }, { "page": "egsea.data", "title": "EGSEAdata databases information", "topics": [ "egsea.data" ] }, { "page": "gsetdb.human", "title": "GeneSetDB Human Collections", "topics": [ "gsetdb.human" ] }, { "page": "gsetdb.mouse", "title": "GeneSetDB Mouse Collections", "topics": [ "gsetdb.mouse" ] }, { "page": "gsetdb.rat", "title": "GeneSetDB Rat Collections", "topics": [ "gsetdb.rat" ] }, { "page": "il13.data", "title": "Human IL-13 dataset", "topics": [ "il13.data" ] }, { "page": "il13.data.cnt", "title": "Human IL-13 dataset - Raw Counts", "topics": [ "il13.data.cnt" ] }, { "page": "il13.gsa", "title": "EGSEA analysis results on the human IL-13 dataset", "topics": [ "il13.gsa" ] }, { "page": "kegg.pathways", "title": "KEGG Pathways Collections", "topics": [ "kegg.pathways" ] }, { "page": "mam.data", "title": "Mouse mammary cell dataset", "topics": [ "mam.data" ] }, { "page": "Mm.c2", "title": "Mouse C2 MSigDB Gene Set Collections", "topics": [ "Mm.c2" ] }, { "page": "Mm.c3", "title": "Mouse C3 MSigDB Gene Set Collections", "topics": [ "Mm.c3" ] }, { "page": "Mm.c4", "title": "Mouse C4 MSigDB Gene Set Collections", "topics": [ "Mm.c4" ] }, { "page": "Mm.c5", "title": "Mouse C5 MSigDB Gene Set Collections", "topics": [ "Mm.c5" ] }, { "page": "Mm.c6", "title": "Mouse C6 MSigDB Gene Set Collections", "topics": [ "Mm.c6" ] }, { "page": "Mm.c7", "title": "Mouse C7 MSigDB Gene Set Collections", "topics": [ "Mm.c7" ] }, { "page": "Mm.H", "title": "Mouse H MSigDB Gene Set Collections", "topics": [ "Mm.H" ] }, { "page": "msigdb", "title": "MSigDB Gene Set Collections", "topics": [ "msigdb" ] } ], "_rundeps": [], "_score": 3.681241237375587, "_indexed": false, "_nocasepkg": "egseadata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/EGSEAdata", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.40.0", "date": "2026-10-10T11:21:12.000Z", "distro": "resolute", "commit": "5ef6b3a8065ed682de59de12d0daee07d37109af", "fileid": "https://r2.ropensci.org/99de104e0604f79c2552a1a7abec78d553106a77f1ac1e43489892fbc9dfa9ec", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047227574" }, { "r": "4.6.1", "os": "linux", "version": "1.40.0", "date": "2026-10-10T11:21:16.000Z", "distro": "resolute", "commit": "5ef6b3a8065ed682de59de12d0daee07d37109af", "fileid": "https://r2.ropensci.org/34f3d725988ad2d97309df070ed15bd44472eef7bb001dd9a02b91bef2082e8f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047227574" } ] }