{ "_id": "6a1a75281d7bb097a09d1d34", "Package": "ELViS", "Title": "An R Package for Estimating Copy Number Levels of Viral Genome\nSegments Using Base-Resolution Read Depth Profile", "Version": "1.4.0", "Authors@R": "c(\nperson(\"Hyo Young\", \"Choi\", , \"hyoyoung.choi@uthsc.edu\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-7627-8493\")),\nperson(\"Jin-Young\", \"Lee\", , \"jlee307@uthsc.edu\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-5366-7488\")),\nperson(\"Xiaobei\", \"Zhao\", , \"xiaobei_zhao@uthsc.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5277-0846\")),\nperson(\"Jeremiah R.\", \"Holt\", , \"jholt41@uthsc.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5201-5015\")),\nperson(\"Katherine A.\", \"Hoadley\", , \"hoadley@med.unc.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-1216-477X\")),\nperson(\"D. 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Neil Hayes", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Motivation for submitting to Bioconductor", "Installation", "Run Example", "Data preparation", "Virus Reference Genome File", "BAM Files", "Generate Raw Read Depth Matrix with Toy Examples", "Filtering Out Low Depth Samples", "Run ELViS using the Filtered Depth Matrix", "Plotting Figures", "sessionInfo" ], "created": "2025-02-28 21:54:08", "modified": "2025-09-05 16:38:12", "commits": 8 } ], "_score": 4.812913356642856, "_indexed": false, "_nocasepkg": "elvis", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/ELViS", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.4.0", "date": "2026-05-29T08:05:32.000Z", "distro": "noble", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "192bc3dd5201f4df528048d27a7060cf19881a322c7a244f982f1f219e424630", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" }, { "r": "4.6.0", "os": "linux", "version": "1.4.0", "date": "2026-05-29T08:05:37.000Z", "distro": "noble", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "a6fca4c371c781e7c66f7250d6d2537c4972f0b236c5d445ba4dbabdc76390d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" }, { "r": "4.5.3", "os": "mac", "version": "1.4.0", "date": "2026-05-29T09:29:53.000Z", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "a4248a40295094a88d5e14759c0744933c86a1308fa85a8ea4666f98cf5702dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" }, { "r": "4.6.0", "os": "mac", "version": "1.4.0", "date": "2026-05-29T09:30:07.000Z", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "3c67bf54e353052eb7ce9cc21292d77e043b1ed3b413c9a5ddd90153d6d9da0a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" }, { "r": "4.6.0", "os": "wasm", "version": "1.4.0", "date": "2026-05-29T08:04:54.000Z", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "b5af422dde814c2f59810b75f36af59f76090e263c2d47b766daf84b42e6dcdb", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" }, { "r": "4.7.0", "os": "win", "version": "1.4.0", "date": "2026-05-29T08:10:14.000Z", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "c93cd9df4ba1adc207d0e19a4fbdd230242a67b5fa05e062a811ecd77b071cf5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" }, { "r": "4.5.3", "os": "win", "version": "1.4.0", "date": "2026-05-29T08:14:00.000Z", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "a283213019f2f633457899cc2e8ab3d3d0c25bae997882943dfc4aba3f94d2a9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" }, { "r": "4.6.0", "os": "win", "version": "1.4.0", "date": "2026-05-30T05:20:49.000Z", "commit": "185e850e5e57429313638c055aec3b53efcc050b", "fileid": "08315c5845d7dc57b26cfeb3430b6ca16678e8167d1708c3761ed45be9e75715", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26625477302" } ] }