{
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  "Package": "EMTscoreData",
  "Title": "Single-cell RNA-seq datasets of EMT responses from Cook et al.\n(2020)",
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  "Authors@R": "c(person(\"Haimei\", \"Wen\", email = \"hudie.luoluo@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0006-1600-1210\")),\nperson(\"Tian\", \"Hong\",\nrole = \"fnd\"))",
  "Description": "Provides 12 single-cell RNA-seq datasets profiling\nepithelial–mesenchymal transition (EMT) in human cancer cell\nlines (MCF7, OVCA420, DU145, and A549) under TGF-beta\nstimulation, kinase inhibition, and time-course conditions, as\nreported by Cook DP and Vanderhyden BC (2020). The datasets are\ndistributed via ExperimentHub as SingleCellExperiment objects.",
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  "URL": "https://github.com/wenmm/EMTscoreData",
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  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:38:15 UTC",
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  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "25d2ca85da8b6b8876a27d9235595406e558152f",
  "Author": "Haimei Wen [aut, cre] (ORCID: <https://orcid.org/0009-0006-1600-1210>),\nTian Hong [fnd]",
  "Maintainer": "Haimei Wen <hudie.luoluo@gmail.com>",
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  "_created": "2026-10-10T12:16:17.000Z",
  "_published": "2026-10-11T08:32:05.909Z",
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      "title": "EMTscoreData Package",
      "author": "haimei wen",
      "engine": "knitr::rmarkdown",
      "headings": [
        "1. Introduction of EMTscoreData",
        "2. Installation",
        "Install the development version from GitHub",
        "Install from Bioconductor (recommended once available):",
        "3. Download data from the EMTscoreData R package",
        "3.1 Browse all EMTscoreData records",
        "3.2 Download data using the unique identifier:",
        "3.3 What is inside a SingleCellExperiment?",
        "4. Data analysis and visualization",
        "4.1 Load an EMT gene set (GMT) from Zenodo",
        "4.2 Calculating EMT Scores for Datasets Stored in EMTscoreData"
      ],
      "created": "2025-12-03 23:58:30",
      "modified": "2026-01-23 23:21:31",
      "commits": 7
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