{
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  "Package": "EpiMix.data",
  "Title": "Data for the EpiMix package",
  "Version": "1.14.0",
  "Authors@R": "c(\nperson(\"Yuanning\", \"Zheng\", email = c(\"eric2021@stanford.edu\"), role = c(\"aut\", \"cre\"))\n)",
  "Description": "Supporting data for the EpiMix R package. It include: -\nHM450_lncRNA_probes.rda - HM450_miRNA_probes.rda -\nEPIC_lncRNA_probes.rda - EPIC_miRNA_probes.rda -\nEpigenomeMap.rda - LUAD.sample.annotation - TCGA_BatchData -\nMET.data - mRNA.data - microRNA.data - lncRNA.data -\nSample_EpiMixResults_lncRNA - Sample_EpiMixResults_miRNA -\nSample_EpiMixResults_Regular - Sample_EpiMixResults_Enhancer -\nlncRNA expression data of tumors from TCGA that are stored in\nthe ExperimentHub.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "biocViews": "ExperimentData, ExperimentHub, Genome, RNASeqData,\nExpressionData",
  "NeedsCompilation": "no",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/gevaertlab/EpiMix/issues",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:36:13 UTC",
  "RemoteUrl": "https://github.com/bioc/EpiMix.data",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "5da973fe9aed5770406e3af401551481f663fa5e",
  "Packaged": {
    "Date": "2026-10-10 11:15:43 UTC",
    "User": "root"
  },
  "Author": "Yuanning Zheng [aut, cre]",
  "Maintainer": "Yuanning Zheng <eric2021@stanford.edu>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "EpiMix.data_1.14.0.tar.gz",
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    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
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    "name": "Yuanning Zheng",
    "email": "eric2021@stanford.edu",
    "login": "yuanningeric",
    "description": "",
    "uuid": 45788503
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  "_dependencies": [
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      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "ExperimentHub",
      "version": ">= 0.99.6",
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    "experimenthub",
    "genome",
    "rnaseqdata",
    "expressiondata",
    "datapkg"
  ],
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  "_contributors": [
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
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  "_exports": [],
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      "title": "A character vector that maps CpG probes to lncRNA genes. The vectors names are genes and the values are CpG probes",
      "object": "EPIC_lncRNA_probes",
      "file": "EPIC_lncRNA_probes.rda",
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      ],
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      "tojson": true
    },
    {
      "name": "EPIC_miRNA_probes",
      "title": "A dataframe that maps CpG probes genes to microRNA genes. The vectors names are genes and the values are CpG probes",
      "object": "EPIC_miRNA_probes",
      "file": "EPIC_miRNA_probes.rda",
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        "gene",
        "gene_upper",
        "promoter"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "EpigenomeMap",
      "title": "A list that map epigenome groups to epigenome IDs",
      "object": "EpigenomeMap",
      "file": "EpigenomeMap.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "HM450_lncRNA_probes",
      "title": "A character vector that maps CpG probes to lncRNA genes. The vectors names are genes and the values are CpG probes",
      "object": "HM450_lncRNA_probes",
      "file": "HM450_lncRNA_probes.rda",
      "class": [
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      "tojson": true
    },
    {
      "name": "HM450_miRNA_probes",
      "title": "A dataframe that maps CpG probes genes to microRNA genes.",
      "object": "HM450_miRNA_probes",
      "file": "HM450_miRNA_probes.rda",
      "class": [
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        "gene_upper",
        "promoter"
      ],
      "rows": 17495,
      "table": true,
      "tojson": true
    },
    {
      "name": "lncRNA.data",
      "title": "Toy lncRNA expression dataset for demonstration purpose.",
      "object": "lncRNA.data",
      "file": "lncRNA.data.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 2,
      "table": true,
      "tojson": true
    },
    {
      "name": "LUAD.sample.annotation",
      "title": "toy dataset for sample annotation",
      "object": "LUAD.sample.annotation",
      "file": "LUAD.sample.annotation.rda",
      "class": [
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      ],
      "fields": [
        "primary",
        "sample.type"
      ],
      "rows": 489,
      "table": true,
      "tojson": true
    },
    {
      "name": "MET.data",
      "title": "Toy DNA methylation dataset for demonstration purpose.",
      "object": "MET.data",
      "file": "MET.data.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 18,
      "table": true,
      "tojson": true
    },
    {
      "name": "microRNA.data",
      "title": "Toy microRNA expression dataset for demonstration purpose.",
      "object": "microRNA.data",
      "file": "microRNA.data.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 3,
      "table": true,
      "tojson": true
    },
    {
      "name": "mRNA.data",
      "title": "Toy gene expression dataset for demonstration purpose.",
      "object": "mRNA.data",
      "file": "mRNA.data.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 1011,
      "table": true,
      "tojson": true
    },
    {
      "name": "Sample_EpiMixResults_Enhancer",
      "title": "toy dataset for EpiMix output with Enhancer mode",
      "object": "Sample_EpiMixResults_Enhancer",
      "file": "Sample_EpiMixResults_Enhancer.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "Sample_EpiMixResults_lncRNA",
      "title": "toy dataset for EpiMix output with lncRNA mode",
      "object": "Sample_EpiMixResults_lncRNA",
      "file": "Sample_EpiMixResults_lncRNA.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "Sample_EpiMixResults_miRNA",
      "title": "toy dataset for EpiMix output with miRNA mode",
      "object": "Sample_EpiMixResults_miRNA",
      "file": "Sample_EpiMixResults_miRNA.rda",
      "class": [
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      ],
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      "tojson": true
    },
    {
      "name": "Sample_EpiMixResults_Regular",
      "title": "toy dataset for EpiMix output with Regular mode",
      "object": "Sample_EpiMixResults_Regular",
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      "name": "TCGA_BatchData",
      "title": "A dataframe with the batch information of TCGA patient.",
      "object": "TCGA_BatchData",
      "file": "TCGA_BatchData.rda",
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        "Batch"
      ],
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      "table": true,
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  "_readme": "https://github.com/bioc/EpiMix.data/raw/RELEASE_3_23/README.md",
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    "askpass",
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    "httr",
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    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
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  "_vignettes": [
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      "source": "RetrieveData.Rmd",
      "filename": "RetrieveData.html",
      "title": "EpiMix.data",
      "author": "| Yuanning Zheng, John Jun, Kevin Brennan and Olivier Gevaert | | Stanford Center for Biomedical Informatics Research (BIMR) | Department of Medicine | 1265 Welch Road | Stanford CA, 94305-5479",
      "engine": "knitr::rmarkdown",
      "headings": [
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