{ "_id": "6a1bea161d7bb097a0a1e09d", "Package": "FeatSeekR", "Type": "Package", "Title": "FeatSeekR an R package for unsupervised feature selection", "Version": "1.12.0", "Authors@R": "person(\"Tuemay\", \"Capraz\",\nemail = \"tuemay.capraz@embl.de\",\nrole = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-2547-067X\" ))", "Description": "FeatSeekR performs unsupervised feature selection using\nreplicated measurements. It iteratively selects features with\nthe highest reproducibility across replicates, after projecting\nout those dimensions from the data that are spanned by the\npreviously selected features. The selected a set of features\nhas a high replicate reproducibility and a high degree of\nuniqueness.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "BugReports": "https://github.com/tcapraz/FeatSeekR/issues", "URL": "https://github.com/tcapraz/FeatSeekR", "biocViews": "Software, StatisticalMethod, FeatureExtraction,\nMassSpectrometry", "Config/testthat/edition": "3", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 13:00:40 UTC", "RemoteUrl": "https://github.com/bioc/FeatSeekR", "RemoteRef": "RELEASE_3_23", "RemoteSha": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-31 06:45:51 UTC", "User": "root" }, "Author": "Tuemay Capraz [cre, aut] (ORCID:\n)", "Maintainer": "Tuemay Capraz ", "MD5sum": "00d71224f6de5d38a4e79ff8b9f390e3", "_user": "bioc-release", "_type": "src", "_file": "FeatSeekR_1.12.0.tar.gz", "_fileid": "785d0996d5a58e94b43cf9aaacadb984d4a0a1955ddb21f0ecc4b21a0a66232f", "_filesize": 213590, "_sha256": "785d0996d5a58e94b43cf9aaacadb984d4a0a1955ddb21f0ecc4b21a0a66232f", "_created": "2026-05-31T06:45:51.000Z", "_published": "2026-05-31T07:58:14.421Z", "_jobs": [ { "job": 78706496046, "time": 165, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7314554886" }, { "job": 78706496040, "time": 250, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7314563511" }, { "job": 78706496048, "time": 253, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7314563779" }, { "job": 78706496087, "time": 126, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7314923561" }, { "job": 78706496022, "time": 175, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7315016055" }, { "job": 78706311081, "time": 216, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7314538342" }, { "job": 78706496028, "time": 138, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7314552101" }, { "job": 78706496057, "time": 186, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7314556961" }, { "job": 78706496056, "time": 193, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7314557825" }, { "job": 78706496047, "time": 173, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7314555789" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 3 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/FeatSeekR", "_commit": { "id": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777381240 }, "_maintainer": { "name": "Tuemay Capraz", "email": "tuemay.capraz@embl.de", "orcid": "0000-0002-2547-067X" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "pheatmap", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "pracma", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.13.0", "bioc": "3.24" }, { "branch": "release", "version": "1.12.0", "bioc": "3.23" } ], "_topics": [ "software", "statisticalmethod", "featureextraction", "massspectrometry" ], "_stars": 2, "_contributors": [ { "user": "jwokaty", "count": 8, "uuid": 1744257 }, { "user": "tcapraz", "count": 1, "uuid": 58771919 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 266, "source": "https://www.bioconductor.org/packages/stats/bioc/FeatSeekR" }, "_devurl": "https://github.com/tcapraz/featseekr", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/FeatSeekR.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/tcapraz/featseekr", "_realowner": "bioc", "_cranurl": false, "_exports": [ "FeatSeek", "plotSelectedFeatures", "plotVarianceExplained", "simData" ], "_help": [ { "page": "FeatSeek", "title": "FeatSeek", "topics": [ "FeatSeek" ] }, { "page": "FeatSeekR", "title": "FeatSeekR an R package for unsupervised feature selection", "topics": [ "FeatSeekR" ] }, { "page": "plotSelectedFeatures", "title": "plotSelectedFeatures", "topics": [ "plotSelectedFeatures" ] }, { "page": "plotVarianceExplained", "title": "plotVarianceExplained", "topics": [ "plotVarianceExplained" ] }, { "page": "simData", "title": "simData", "topics": [ "simData" ] } ], "_readme": "https://github.com/bioc/FeatSeekR/raw/RELEASE_3_23/README.md", "_rundeps": [ "abind", "Biobase", "BiocGenerics", "cli", "DelayedArray", "farver", "generics", "GenomicRanges", "glue", "gtable", "IRanges", "labeling", "lattice", "lifecycle", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "pheatmap", "pracma", "R6", "RColorBrewer", "rlang", "S4Arrays", "S4Vectors", "scales", "Seqinfo", "SparseArray", "SummarizedExperiment", "viridisLite", "XVector" ], "_vignettes": [ { "source": "FeatSeekR-vignette.Rmd", "filename": "FeatSeekR-vignette.html", "title": "FeatSeekR user guide", "author": "Tuemay Capraz", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Feature selection on simulated data", "Session Info" ], "created": "2021-11-24 14:14:59", "modified": "2025-01-28 10:56:21", "commits": 21 } ], "_score": 4.301029995663981, "_indexed": false, "_nocasepkg": "featseekr", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/FeatSeekR", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.12.0", "date": "2026-05-31T06:48:43.000Z", "distro": "noble", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "9209104f1c729fc90a10ef974eaf111000a8b27fd9ae89933c523a7f02b6ebf4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" }, { "r": "4.6.0", "os": "linux", "version": "1.12.0", "date": "2026-05-31T06:48:37.000Z", "distro": "noble", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "0b4c6a1ef467bf49ca3be75bb6cb6185a1b00e0c802fa30070a721ab44f95594", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" }, { "r": "4.5.3", "os": "mac", "version": "1.12.0", "date": "2026-05-31T07:42:42.000Z", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "5521009812b876ea2d933885d0ec4ca830afd560f0550b87586585f5ae3a0fa6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" }, { "r": "4.6.0", "os": "mac", "version": "1.12.0", "date": "2026-05-31T07:56:28.000Z", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "c3a451fe9e8d8baed223f087985e980fa07cc53385d8933a85fcfc8c18fef748", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" }, { "r": "4.6.0", "os": "wasm", "version": "1.12.0", "date": "2026-05-31T06:48:37.000Z", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "35d44625a257cafa9f756c028f3bada764c853be5a3b19f0ec153c8a2eb06891", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" }, { "r": "4.7.0", "os": "win", "version": "1.12.0", "date": "2026-05-31T06:47:20.000Z", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "18879c4a806194d2bf9d949558264142ae531adc3ac60e2ab7ebb4c64a9566bd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" }, { "r": "4.5.3", "os": "win", "version": "1.12.0", "date": "2026-05-31T06:47:31.000Z", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "aceb7a060b5a49ec094a0bd8ea2f1ceec113a39a688f3f978c0c84dc60aadc41", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" }, { "r": "4.6.0", "os": "win", "version": "1.12.0", "date": "2026-05-31T06:47:17.000Z", "commit": "c4f3dc7827a2601367c868b827a9ac664c009ae8", "fileid": "b10e9b7c5806bab1e5dd19624e6f001758389d8f2dc30aae59b9e068d1f57655", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705636589" } ] }