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  "Date": "2026-03-17",
  "Title": "Using self-organizing maps for visualization and interpretation\nof cytometry data",
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  "Description": "FlowSOM offers visualization options for cytometry data,\nby using Self-Organizing Map clustering and Minimal Spanning\nTrees.",
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  "URL": "http://www.r-project.org, http://dambi.ugent.be",
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      "page": "PlotFileScatters",
      "title": "PlotFileScatters",
      "topics": [
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    },
    {
      "page": "PlotFlowSOM",
      "title": "PlotFlowSOM",
      "topics": [
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    },
    {
      "page": "PlotGroups",
      "title": "PlotGroups",
      "topics": [
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    },
    {
      "page": "PlotLabels",
      "title": "PlotLabels",
      "topics": [
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    },
    {
      "page": "PlotManualBars",
      "title": "PlotManualBars",
      "topics": [
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    },
    {
      "page": "PlotMarker",
      "title": "PlotMarker",
      "topics": [
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    },
    {
      "page": "PlotMFIHeatmap",
      "title": "PlotMFIHeatmap",
      "topics": [
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    },
    {
      "page": "PlotNode",
      "title": "PlotNode Plot star chart",
      "topics": [
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      ]
    },
    {
      "page": "PlotNumbers",
      "title": "PlotNumbers",
      "topics": [
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    },
    {
      "page": "PlotOutliers",
      "title": "PlotOutliers",
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    },
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      "page": "PlotOverview2D",
      "title": "PlotOverview2D",
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    },
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      "page": "PlotPies",
      "title": "PlotPies",
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      "page": "PlotSD",
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    {
      "page": "PlotStarLegend",
      "title": "PlotStarLegend",
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    },
    {
      "page": "PlotStars",
      "title": "PlotStars",
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      "page": "PlotVariable",
      "title": "PlotVariable",
      "topics": [
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    {
      "page": "print.FlowSOM",
      "title": "Print FlowSOM object",
      "topics": [
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    },
    {
      "page": "Purity",
      "title": "Calculate mean weighted cluster purity",
      "topics": [
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    },
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      "page": "query_multiple",
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    },
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    },
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      "page": "ReadInput",
      "title": "Read FCS-files or flowFrames",
      "topics": [
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    },
    {
      "page": "SaveClustersToFCS",
      "title": "Write FlowSOM clustering results to the original FCS files",
      "topics": [
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      "title": "ScaleStarHeights",
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    {
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      "page": "TestOutliers",
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    {
      "page": "UpdateFlowSOM",
      "title": "UpdateFlowSOM",
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      "page": "UpdateMetaclusters",
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    },
    {
      "page": "UpdateNodeSize",
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      "source": "FlowSOM.Rnw",
      "filename": "FlowSOM.pdf",
      "title": "FlowSOM",
      "engine": "utils::Sweave",
      "headings": [
        "1 Installation",
        "2 Preprocessing",
        "3 The easy way",
        "4 Reading the data",
        "5 Building the self-organizing map",
        "6 Building the minimal spanning tree",
        "7 Meta-clustering the data",
        "8 Detecting nodes with a specific pattern",
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      "created": "2016-09-06 07:31:44",
      "modified": "2025-12-22 10:20:34",
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