{ "_id": "6a1947e0acfb0bcc41dda765", "Package": "GEM", "Type": "Package", "Title": "GEM: fast association study for the interplay of Gene,\nEnvironment and Methylation", "Version": "1.38.0", "Date": "2015-12-05", "Author": "Hong Pan, Joanna D Holbrook, Neerja Karnani, Chee-Keong Kwoh", "Maintainer": "Hong Pan ", "Description": "Tools for analyzing EWAS, methQTL and GxE genome widely.", "License": "Artistic-2.0", "biocViews": "MethylSeq, MethylationArray, GenomeWideAssociation,\nRegression, DNAMethylation, SNP, GeneExpression, GUI", "VignetteBuilder": "knitr", "RoxygenNote": "5.0.1", "NeedsCompilation": "no", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:43:38 UTC", "RemoteUrl": "https://github.com/bioc/GEM", "RemoteRef": "RELEASE_3_23", "RemoteSha": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "Packaged": { "Date": "2026-05-29 06:59:15 UTC", "User": "root" }, "MD5sum": "59bd4846d26cddf47ff9406bfc5a63bd", "_user": "bioc-release", "_type": "src", "_file": "GEM_1.38.0.tar.gz", "_fileid": "710e0afdea823c8acff185710c289d46fa140a829e3f1c6c8c1c2a7215cb5426", "_filesize": 1086474, "_sha256": "710e0afdea823c8acff185710c289d46fa140a829e3f1c6c8c1c2a7215cb5426", "_created": "2026-05-29T06:59:15.000Z", "_published": "2026-05-29T08:01:36.552Z", "_jobs": [ { "job": 78453445016, "time": 153, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7284972970" }, { "job": 78453445092, "time": 215, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7284988205" }, { "job": 78453445133, "time": 201, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7284985012" }, { "job": 78453445137, "time": 114, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7285956148" }, { "job": 78453445084, "time": 118, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7285956925" }, { "job": 78453011070, "time": 212, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7284935162" }, { "job": 78453445077, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7284963537" }, { "job": 78453445050, "time": 109, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7284961844" }, { "job": 78453445017, "time": 113, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7284963185" }, { "job": 78453445045, "time": 107, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7284961856" } ], "_bioccheck": { "error": 2, "warning": 2, "note": 14 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/GEM", "_commit": { "id": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380218 }, "_maintainer": { "name": "Hong Pan", "email": "pan_hong@sics.a-star.edu.sg" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3", "role": "Depends" }, { "package": "tcltk", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "BiocGenerics", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.39.0", "bioc": "3.24" }, { "branch": "release", "version": "1.38.0", "bioc": "3.23" } ], "_topics": [ "methylseq", "methylationarray", "genomewideassociation", "regression", "dnamethylation", "snp", "geneexpression", "gui" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 359, "source": "https://www.bioconductor.org/packages/stats/bioc/GEM" }, "_mentions": 317, "_searchresults": 33, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GEM.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "GEM_Emodel", "GEM_Gmodel", "GEM_GUI", "GEM_GWASmodel", "GEM_GxEmodel" ], "_help": [ { "page": "GEM-package", "title": "GEM: Fast association study for the interplay of Gene, Environment and Methylation", "topics": [ "GEM-package" ] }, { "page": "GEM_Emodel", "title": "GEM_Emodel Analysis", "topics": [ "GEM_Emodel" ] }, { "page": "GEM_Gmodel", "title": "GEM_Gmodel Analysis", "topics": [ "GEM_Gmodel" ] }, { "page": "GEM_GUI", "title": "Graphical User Interface (GUI) for GEM", "topics": [ "GEM_GUI" ] }, { "page": "GEM_GWASmodel", "title": "GEM_GWASmodel", "topics": [ "GEM_GWASmodel" ] }, { "page": "GEM_GxEmodel", "title": "GEM_GxEmodel", "topics": [ "GEM_GxEmodel" ] }, { "page": "SlicedData-class", "title": "Class 'SlicedData' for storing large matrices", "topics": [ "as.matrix,SlicedData-method", "colMeans,SlicedData-method", "colnames,SlicedData-method", "colnames<-,SlicedData-method", "colSums,SlicedData-method", "dim,SlicedData-method", "length,SlicedData-method", "NCOL,SlicedData-method", "ncol,SlicedData-method", "NROW,SlicedData-method", "nrow,SlicedData-method", "rowMeans,SlicedData-method", "rownames,SlicedData-method", "rownames<-,SlicedData-method", "rowSums,SlicedData-method", "show,SlicedData-method", "SlicedData", "SlicedData-class", "summary.SlicedData", "[[,SlicedData-method", "[[<-,SlicedData-method" ] } ], "_readme": "https://github.com/bioc/GEM/raw/RELEASE_3_23/README.md", "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "user_guide.Rmd", "filename": "user_guide.html", "title": "GEM: fast association study for the interplay of Gene, Environment and Methylation", "author": "Hong Pan", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Getting Started", "1. Install and load the Package", "Installation", "Loading", "Launch the GUI", "2. Desctiption of input data", "3. Work flow and result demonstration", "References" ], "created": "2016-06-04 18:14:00", "modified": "2018-08-30 17:49:14", "commits": 2 } ], "_score": 5.518513939877888, "_indexed": false, "_nocasepkg": "gem", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/GEM", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.38.0", "date": "2026-05-29T07:02:24.000Z", "distro": "noble", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "fac439350ca732db989d08067445db4b5e1a337481750b0465eaf38ec3ea58a9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" }, { "r": "4.6.0", "os": "linux", "version": "1.38.0", "date": "2026-05-29T07:02:15.000Z", "distro": "noble", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "b1033c919212b45aa181b91aec297f4f5c1350d6f89ff81296e9753c94eb158c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" }, { "r": "4.5.3", "os": "mac", "version": "1.38.0", "date": "2026-05-29T08:00:45.000Z", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "0c135f8ed6bed7af62f85bd383451c6c7a86c0f49f29b261a1d059a662b59004", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" }, { "r": "4.6.0", "os": "mac", "version": "1.38.0", "date": "2026-05-29T08:00:48.000Z", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "283f110c24e63d3d582900a8605a07346ef792ab0b3515afd5fb387f986bd6b2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" }, { "r": "4.6.0", "os": "wasm", "version": "1.38.0", "date": "2026-05-29T07:01:30.000Z", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "d60002b1df5f227b56a89b92235d8b62141c69bc3c2b03f04bb26ca2f0cd8dae", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" }, { "r": "4.7.0", "os": "win", "version": "1.38.0", "date": "2026-05-29T07:00:40.000Z", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "c012aba23fcdc06c13d6fcbbf31a341f815160d26f3a5f32b4750e4b7892af42", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" }, { "r": "4.5.3", "os": "win", "version": "1.38.0", "date": "2026-05-29T07:00:42.000Z", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "ef8e263f42ae7e5607c4a6b531ab4c89a7a2b0bf62eb1a53206e1283d9d61905", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" }, { "r": "4.6.0", "os": "win", "version": "1.38.0", "date": "2026-05-29T07:00:37.000Z", "commit": "04c7ece6bf2a351dbf49d10d0d8566a974f631be", "fileid": "498ebe4a4a573e7255c84ec5526e8fd6b74ad507111bd1239984b6074148d1c6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622981465" } ] }