{
  "_id": "6a1be4851d7bb097a0a196f4",
  "Package": "GOpro",
  "Type": "Package",
  "Title": "Find the most characteristic gene ontology terms for groups of\nhuman genes",
  "Version": "1.38.0",
  "Author": "Lidia Chrabaszcz",
  "Maintainer": "Lidia Chrabaszcz <chrabaszcz.lidia@gmail.com>",
  "Description": "Find the most characteristic gene ontology terms for\ngroups of human genes. This package was created as a part of\nthe thesis which was developed under the auspices of MI^2 Group\n(http://mi2.mini.pw.edu.pl/,\nhttps://github.com/geneticsMiNIng).",
  "License": "GPL-3",
  "RoxygenNote": "6.0.1",
  "VignetteBuilder": "knitr",
  "LazyData": "true",
  "biocViews": "Annotation, Clustering, GO, GeneExpression,\nGeneSetEnrichment, MultipleComparison",
  "URL": "https://github.com/mi2-warsaw/GOpro",
  "BugReports": "https://github.com/mi2-warsaw/GOpro/issues",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:44:20 UTC",
  "RemoteUrl": "https://github.com/bioc/GOpro",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-31 06:38:47 UTC",
    "User": "root"
  },
  "MD5sum": "c87249ee7fbf4a256f7ec54fd6a8f7eb",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "GOpro_1.38.0.tar.gz",
  "_fileid": "3aec0a8afb2edde68fbe7c9b29125e8f616a10b20c1a0e9652c4a1ba7f29ae98",
  "_filesize": 1044390,
  "_sha256": "3aec0a8afb2edde68fbe7c9b29125e8f616a10b20c1a0e9652c4a1ba7f29ae98",
  "_created": "2026-05-31T06:38:47.000Z",
  "_published": "2026-05-31T07:34:29.899Z",
  "_jobs": [
    {
      "job": 78706149863,
      "time": 254,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7314522945"
    },
    {
      "job": 78706149896,
      "time": 339,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7314531375"
    },
    {
      "job": 78706149877,
      "time": 464,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7314543605"
    },
    {
      "job": 78706149898,
      "time": 330,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314530283"
    },
    {
      "job": 78706149886,
      "time": 445,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314541820"
    },
    {
      "job": 78706149887,
      "time": 214,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7314846357"
    },
    {
      "job": 78706149888,
      "time": 589,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7314570986"
    },
    {
      "job": 78706149880,
      "time": 245,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314855499"
    },
    {
      "job": 78706149881,
      "time": 602,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314569760"
    },
    {
      "job": 78705862007,
      "time": 311,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314496327"
    },
    {
      "job": 78706149857,
      "time": 220,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314519521"
    },
    {
      "job": 78706149862,
      "time": 797,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7314577093"
    },
    {
      "job": 78706149879,
      "time": 804,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7314577854"
    },
    {
      "job": 78706149867,
      "time": 714,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314568921"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 0,
    "note": 10
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/GOpro",
  "_commit": {
    "id": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380260
  },
  "_maintainer": {
    "name": "Lidia Chrabaszcz",
    "email": "chrabaszcz.lidia@gmail.com",
    "login": "lidiaad",
    "description": "",
    "uuid": 10572496
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "BH",
      "role": "LinkingTo"
    },
    {
      "package": "AnnotationDbi",
      "role": "Imports"
    },
    {
      "package": "dendextend",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Imports"
    },
    {
      "package": "GO.db",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "MultiAssayExperiment",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "RTCGA.PANCAN12",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "annotation",
    "clustering",
    "go",
    "geneexpression",
    "genesetenrichment",
    "multiplecomparison",
    "cpp"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "lidiaad",
      "count": 4,
      "uuid": 10572496
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 436,
    "source": "https://www.bioconductor.org/packages/stats/bioc/GOpro"
  },
  "_devurl": "https://github.com/mi2-warsaw/gopro",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GOpro.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mi2-warsaw/gopro",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "findGO"
  ],
  "_datasets": [
    {
      "name": "exrtcga",
      "title": "Expressions of human genes.",
      "object": "exrtcga",
      "class": [
        "MultiAssayExperiment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "exrtcga",
      "title": "Expressions of human genes.",
      "topics": [
        "exrtcga"
      ]
    },
    {
      "page": "findGO",
      "title": "Find top Gene Ontology terms for given genes.",
      "topics": [
        "findGO"
      ]
    },
    {
      "page": "GOpro",
      "title": "GOpro: find the most characteristic gene ontology terms for groups of genes",
      "topics": [
        "GOpro-package",
        "GOpro"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "askpass",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "DelayedArray",
    "dendextend",
    "doParallel",
    "dplyr",
    "farver",
    "fastmap",
    "foreach",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "GO.db",
    "gridExtra",
    "gtable",
    "httr",
    "IRanges",
    "isoband",
    "iterators",
    "jsonlite",
    "KEGGREST",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "MultiAssayExperiment",
    "openssl",
    "org.Hs.eg.db",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridis",
    "viridisLite",
    "withr",
    "XVector"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "GOpro_vignette.Rmd",
      "filename": "GOpro_vignette.html",
      "title": "GOpro: Determine groups of genes and find their most characteristic GO term",
      "author": "Lidia Chrabaszcz",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Loading",
        "Overview",
        "Details",
        "Determining significantly different genes based on their expressions",
        "Grouping genes based on their similarity",
        "All pairwise comparisons by Tukey's test",
        "Hierarchical clustering",
        "Finding characteristic gene ontology terms",
        "Data",
        "Example"
      ],
      "created": "2016-10-07 08:32:34",
      "modified": "2018-08-30 17:49:46",
      "commits": 2
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": false,
  "_nocasepkg": "gopro",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/GOpro",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-05-31T06:42:46.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "ea04da477528f39df0ee016a261f82432a9c4e14d9c59b9f32a5764560a68de6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-05-31T06:44:02.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "a91aec7b8c71a79d52e25868b0a297bfa0d67e2269b0b6f80da6971df5c67aba",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-05-31T06:42:35.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "b3f509265c23516ecfd9c1721df54ed110e0bf02e36a9ca45b4f51d99a70ef59",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-05-31T06:43:49.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "e422c55e5fa991ce38384407fe503d3572237b39f6cf335bb1fe92cc25a33043",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-05-31T07:31:08.000Z",
      "arch": "aarch64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "0a8165fc654e0cd97028e2c08d4dda659dc3add71d25118d75ec8a26048bdd81",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-05-31T06:46:37.000Z",
      "arch": "x86_64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "fb330e150d97aa8c62957fc52b6cd53ddba68b54a84826dec7d9d638c33408fc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-05-31T07:31:55.000Z",
      "arch": "aarch64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "69a402ccdd7d298bd6760f9d8b439a4ebe9683106b99174ada78ecc2de14efd0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-05-31T06:46:30.000Z",
      "arch": "x86_64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "43a4ad1b6510cb351ac7af35b2fded82c1d4ca8bc82f43d472e8becdcc8ff0b4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.38.0",
      "date": "2026-05-31T06:43:01.000Z",
      "arch": "emscripten",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "c437efeb4fa3f9f79b7eb0d47cee7368c23a7e61b5065d793ee76d999dd2283c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-05-31T06:49:18.000Z",
      "arch": "x86_64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "6b527fc295b2498fe53713dd1a1be7cc1dec43342b437e2757fac23e435e4420",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-05-31T06:49:19.000Z",
      "arch": "x86_64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "19dfb83cd05561960fef3bd3d84d5da58465fca06af85c781c9cfd0be5cc4cfc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-05-31T06:48:04.000Z",
      "arch": "x86_64",
      "commit": "a4b5762168e6b3e9634e4893e750502d9f9a71c7",
      "fileid": "b25976fb39ce0057e3f5411b4920be7b918a8155bb8bfa2ec42930abd33994a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26705483288"
    }
  ]
}