{
  "_id": "6aaafe943d719c1f8406a9b5",
  "Package": "GOpro",
  "Type": "Package",
  "Title": "Find the most characteristic gene ontology terms for groups of\nhuman genes",
  "Version": "1.38.1",
  "Author": "Lidia Chrabaszcz",
  "Maintainer": "Lidia Chrabaszcz <chrabaszcz.lidia@gmail.com>",
  "Description": "Find the most characteristic gene ontology terms for\ngroups of human genes. This package was created as a part of\nthe thesis which was developed under the auspices of MI^2 Group\n(http://mi2.mini.pw.edu.pl/,\nhttps://github.com/geneticsMiNIng).",
  "License": "GPL-3",
  "RoxygenNote": "6.0.1",
  "VignetteBuilder": "knitr",
  "LazyData": "true",
  "biocViews": "Annotation, Clustering, GO, GeneExpression,\nGeneSetEnrichment, MultipleComparison",
  "URL": "https://github.com/mi2-warsaw/GOpro",
  "BugReports": "https://github.com/mi2-warsaw/GOpro/issues",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-09-16 06:38:11 UTC",
  "RemoteUrl": "https://github.com/bioc/GOpro",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-09-16 20:27:58 UTC",
    "User": "root"
  },
  "_user": "bioc-release",
  "_type": "src",
  "_file": "GOpro_1.38.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/69657644ef9cff199f6d3cdc112aa3c2edfe9deb9e227077b3dcd619a6b97c72",
  "_filesize": 1044402,
  "_sha256": "69657644ef9cff199f6d3cdc112aa3c2edfe9deb9e227077b3dcd619a6b97c72",
  "_expires": "2026-12-25T20:39:45.000Z",
  "_created": "2026-09-16T20:27:58.000Z",
  "_published": "2026-09-16T20:39:48.234Z",
  "_bioccheck": {
    "error": 1,
    "warning": 0,
    "note": 10
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679",
  "_status": "success",
  "_upstream": "https://github.com/bioc/GOpro",
  "_commit": {
    "id": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
    "author": "Lidia <lidia@Lidias-MacBook-Pro.local>",
    "committer": "Lidia <lidia@Lidias-MacBook-Pro.local>",
    "message": "version bump in release\n",
    "time": 1789540691
  },
  "_maintainer": {
    "name": "Lidia Chrabaszcz",
    "email": "chrabaszcz.lidia@gmail.com",
    "login": "lidiaad",
    "description": "",
    "uuid": 10572496
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 104964772980,
      "time": 203,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "10467104652"
    },
    {
      "job": 104964773165,
      "time": 295,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10467558656"
    },
    {
      "job": 104964773049,
      "time": 455,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10467569277"
    },
    {
      "job": 104964773094,
      "time": 300,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10467229818"
    },
    {
      "job": 104964773213,
      "time": 404,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10467424220"
    },
    {
      "job": 104964773218,
      "time": 336,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10467760397"
    },
    {
      "job": 104964773127,
      "time": 602,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10467544581"
    },
    {
      "job": 104964773688,
      "time": 250,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10467069794"
    },
    {
      "job": 104964773238,
      "time": 463,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10467489834"
    },
    {
      "job": 104962964227,
      "time": 327,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10466638328"
    },
    {
      "job": 104964773076,
      "time": 193,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10467563612"
    },
    {
      "job": 104964773163,
      "time": 395,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10466609256"
    },
    {
      "job": 104964773215,
      "time": 378,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10467703509"
    },
    {
      "job": 104964773172,
      "time": 316,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10467444364"
    },
    {
      "job": 104964773118,
      "time": 384,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10466843839"
    },
    {
      "job": 104964773174,
      "time": 319,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10467820109"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "BH",
      "role": "LinkingTo"
    },
    {
      "package": "AnnotationDbi",
      "role": "Imports"
    },
    {
      "package": "dendextend",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Imports"
    },
    {
      "package": "GO.db",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "MultiAssayExperiment",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    },
    {
      "week": "2026-38",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "annotation",
    "clustering",
    "go",
    "geneexpression",
    "genesetenrichment",
    "multiplecomparison",
    "cpp"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "lidiaad",
      "count": 4,
      "uuid": 10572496
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 467,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 560,
    "source": "https://www.bioconductor.org/packages/stats/bioc/GOpro"
  },
  "_devurl": "https://github.com/mi2-warsaw/gopro",
  "_searchresults": 9,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GOpro.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_homeurl": "https://github.com/mi2-warsaw/gopro",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "findGO"
  ],
  "_datasets": [
    {
      "name": "exrtcga",
      "title": "Expressions of human genes.",
      "object": "exrtcga",
      "class": [
        "MultiAssayExperiment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "exrtcga",
      "title": "Expressions of human genes.",
      "topics": [
        "exrtcga"
      ]
    },
    {
      "page": "findGO",
      "title": "Find top Gene Ontology terms for given genes.",
      "topics": [
        "findGO"
      ]
    },
    {
      "page": "GOpro",
      "title": "GOpro: find the most characteristic gene ontology terms for groups of genes",
      "topics": [
        "GOpro-package",
        "GOpro"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "askpass",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "DelayedArray",
    "dendextend",
    "doParallel",
    "dplyr",
    "farver",
    "fastmap",
    "foreach",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "GO.db",
    "gridExtra",
    "gtable",
    "httr",
    "IRanges",
    "isoband",
    "iterators",
    "jsonlite",
    "KEGGREST",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "MultiAssayExperiment",
    "openssl",
    "org.Hs.eg.db",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridis",
    "viridisLite",
    "withr",
    "XVector"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "GOpro_vignette.Rmd",
      "filename": "GOpro_vignette.html",
      "title": "GOpro: Determine groups of genes and find their most characteristic GO term",
      "author": "Lidia Chrabaszcz",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Loading",
        "Overview",
        "Details",
        "Determining significantly different genes based on their expressions",
        "Grouping genes based on their similarity",
        "All pairwise comparisons by Tukey's test",
        "Hierarchical clustering",
        "Finding characteristic gene ontology terms",
        "Data",
        "Example"
      ],
      "created": "2016-10-07 08:32:34",
      "modified": "2018-08-30 17:49:46",
      "commits": 2
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": false,
  "_nocasepkg": "gopro",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/GOpro",
  "_previous": "1.38.0",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.1",
      "date": "2026-09-16T20:31:18.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/b3338dcc4dfef30b9dc8e3d8c906fbcaba97d51359b4f94660a55ad39d908cb6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.1",
      "date": "2026-09-16T20:33:47.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/6d3ea4594ef67b4fc6cfce27fb17bd74e1e532adf8a0c6e97d2e5218052cb09f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.38.1",
      "date": "2026-09-16T20:31:20.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/0f968cde37c9c3245320efa3f8bdcff6fa1d737344c7fa3669da89cca999a04e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.38.1",
      "date": "2026-09-16T20:32:47.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/83a0fd6f6d2721e5023f25083ba0a4577f3e808759eafe4066337a5e220bb9d0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.1",
      "date": "2026-09-16T20:31:06.000Z",
      "arch": "aarch64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/81ad855263ce9707ee157552fb99be89118ee1a941f07d413d012221987d5aad",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.1",
      "date": "2026-09-16T20:33:45.000Z",
      "arch": "x86_64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/5866af42f530bf2458cd52526c76ef528113f68c506a810c3c1554f10c62dc76",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.38.1",
      "date": "2026-09-16T20:30:38.000Z",
      "arch": "aarch64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/de16631962108fb55f0f72d2bbbc28692da8ba85cd8fd19e0c32dbf56e8b27ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.38.1",
      "date": "2026-09-16T20:34:49.000Z",
      "arch": "x86_64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/9931049f1a30c5dd26b31ee0257c0cd8a0f437484b8b745fd5dd5f4f3354e6df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.38.1",
      "date": "2026-09-16T20:31:43.000Z",
      "arch": "emscripten",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/a4e828997504a5f11cfe993c166f79e398f179e3e040ca7e671bb4b46b1b2125",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.38.1",
      "date": "2026-09-16T20:32:20.000Z",
      "arch": "aarch64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/f27bd896447ff3dd236405b170be895d6a6436a8da962e8be4294aaccf3e8e99",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.38.1",
      "date": "2026-09-16T20:30:35.000Z",
      "arch": "x86_64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/ccd3920424d32ef8122ec6ca9a3eee489495c8c25954274c805c3c937a5b45fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.38.1",
      "date": "2026-09-16T20:30:42.000Z",
      "arch": "x86_64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/d6d411cc43b7c83d79a7130e106f120326915dea758799251f6d600a560e22b8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.38.1",
      "date": "2026-09-16T20:32:18.000Z",
      "arch": "aarch64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/d0391255f57dad02754cbde7fcf831367f92331aeab8213953431fe6686b750b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.38.1",
      "date": "2026-09-16T20:30:29.000Z",
      "arch": "x86_64",
      "commit": "caa1ac0fa98c4f33f599c6ebe125986fa5866543",
      "fileid": "https://r2.ropensci.org/b8fef0a9fa7ffc38583039405dd933e1bd7ed5028cba5e0b4993d022967fcebd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35146207679"
    }
  ]
}