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  "Title": "Gene Set Variation Analysis for Microarray and RNA-Seq Data",
  "Authors@R": "c(person(\"Robert\", \"Castelo\", role=c(\"aut\", \"cre\"),\ncomment=c(ORCID=\"0000-0003-2229-4508\"),\nemail=\"robert.castelo@upf.edu\"),\nperson(\"Justin\", \"Guinney\", role=\"aut\", email=\"jguinney@gmail.com\"),\nperson(\"Alexey\", \"Sergushichev\", role=\"ctb\", email=\"alsergbox@gmail.com\"),\nperson(\"Pablo Sebastian\", \"Rodriguez\", role=\"ctb\", email=\"pablo.rodriguez.bio2@gmail.com\"),\nperson(\"Axel\", \"Klenk\", role=\"ctb\", email=\"axel.klenk@gmail.com\"),\nperson(\"Chan Zuckerberg Initiative (CZI)\", role=\"fnd\"),\nperson(\"Spanish Ministry of Science, Innovation and Universities (MCIU)\", role=\"fnd\"))",
  "Description": "Gene Set Variation Analysis (GSVA) is a non-parametric,\nunsupervised method for estimating variation of gene set\nenrichment through the samples of a expression data set. GSVA\nperforms a change in coordinate systems, transforming the data\nfrom a gene by sample matrix to a gene-set by sample matrix,\nthereby allowing the evaluation of pathway enrichment for each\nsample. This new matrix of GSVA enrichment scores facilitates\napplying standard analytical methods like functional\nenrichment, survival analysis, clustering, CNV-pathway analysis\nor cross-tissue pathway analysis, in a pathway-centric manner.",
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  "URL": "https://github.com/rcastelo/GSVA",
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  "Date/Publication": "2026-05-19 17:26:43 UTC",
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  "Author": "Robert Castelo [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2229-4508>),\nJustin Guinney [aut],\nAlexey Sergushichev [ctb],\nPablo Sebastian Rodriguez [ctb],\nAxel Klenk [ctb],\nChan Zuckerberg Initiative (CZI) [fnd],\nSpanish Ministry of Science, Innovation and Universities (MCIU) [fnd]",
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      "title": "Compute gene-sets overlap",
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        "filterGeneSets,GeneSetCollection-method",
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      "title": "Retrieve or Determine Gene Sets",
      "topics": [
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        "geneSets,GsvaExprData-method",
        "geneSets,GsvaMethodParam-method",
        "geneSets,SingleCellExperiment-method",
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      "title": "Gene Set Variation Analysis",
      "topics": [
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        "gsva,gsvaParam-method",
        "gsva,plageParam-method",
        "gsva,ssgseaParam-method",
        "gsva,zscoreParam-method"
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      "page": "gsvaAnnotation",
      "title": "Store and Retrieve Annotation Metadata",
      "topics": [
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        "gsvaAnnotation,GeneSetCollection-method",
        "gsvaAnnotation,GsvaExprData-method",
        "gsvaAnnotation,list-method",
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        "gsvaParam",
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      "topics": [
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        "gsvaScores",
        "gsvaScores,gsvaRanksParam-method"
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