{
  "_id": "6a2d09803efcd9bda42eda23",
  "Package": "GateFinder",
  "Type": "Package",
  "Title": "Projection-based Gating Strategy Optimization for Flow and Mass\nCytometry",
  "Version": "1.32.0",
  "Date": "2018-03-28",
  "Author": "Nima Aghaeepour <naghaeep@gmail.com>, Erin F. Simonds\n<erin.simonds@gmail.com>",
  "Maintainer": "Nima Aghaeepour <naghaeep@gmail.com>",
  "Requires": "alphahull, maptools",
  "Description": "Given a vector of cluster memberships for a cell\npopulation, identifies a sequence of gates (polygon filters on\n2D scatter plots) for isolation of that cell type.",
  "License": "Artistic-2.0",
  "biocViews": "ImmunoOncology, FlowCytometry, CellBiology, Clustering",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-13 07:34:47 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "libjpeg-dev libpng-dev libssl-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:47:35 UTC",
  "RemoteUrl": "https://github.com/bioc/GateFinder",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "efe33220158350cd09459c729f82db71f77b6541",
  "MD5sum": "baa25536c7ef0b6ed3617be230fd99d2",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "GateFinder_1.32.0.tar.gz",
  "_fileid": "7c9124ac25d364719622970cb935847fc7442785e67fbc3c380536a5d18fc4c3",
  "_filesize": 591169,
  "_sha256": "7c9124ac25d364719622970cb935847fc7442785e67fbc3c380536a5d18fc4c3",
  "_created": "2026-06-13T07:34:47.000Z",
  "_published": "2026-06-13T07:40:48.420Z",
  "_jobs": [
    {
      "job": 81173279628,
      "time": 316,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7608723882"
    },
    {
      "job": 81173279643,
      "time": 203,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7608709564"
    },
    {
      "job": 81173279637,
      "time": 262,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7608716954"
    },
    {
      "job": 81173279621,
      "time": 131,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7608700196"
    },
    {
      "job": 81173279620,
      "time": 120,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7608698673"
    },
    {
      "job": 81173073278,
      "time": 193,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7608681302"
    },
    {
      "job": 81173279613,
      "time": 123,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7608698942"
    },
    {
      "job": 81173279629,
      "time": 130,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7608700045"
    },
    {
      "job": 81173279662,
      "time": 120,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7608699171"
    },
    {
      "job": 81173279640,
      "time": 126,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7608699630"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 3,
    "note": 14
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/GateFinder",
  "_commit": {
    "id": "efe33220158350cd09459c729f82db71f77b6541",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380455
  },
  "_maintainer": {
    "name": "Nima Aghaeepour",
    "email": "naghaeep@gmail.com"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "splancs",
      "role": "Imports"
    },
    {
      "package": "mvoutlier",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "diptest",
      "role": "Imports"
    },
    {
      "package": "flowCore",
      "role": "Imports"
    },
    {
      "package": "flowFP",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.33.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.32.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "immunooncology",
    "flowcytometry",
    "cellbiology",
    "clustering"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 368,
    "source": "https://www.bioconductor.org/packages/stats/bioc/GateFinder"
  },
  "_searchresults": 7,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GateFinder.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "GateFinder",
    "plot",
    "plot.GateFinder"
  ],
  "_datasets": [
    {
      "name": "marker.names",
      "title": "LPSData",
      "object": "LPSData",
      "file": "LPSData.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "prop.markers",
      "title": "LPSData",
      "object": "LPSData",
      "file": "LPSData.rda",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "rawdata",
      "title": "LPSData",
      "object": "LPSData",
      "file": "LPSData.rda",
      "class": [
        "flowFrame"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "GateFinder-package",
      "title": "GateFinder",
      "topics": [
        "GateFinder-package"
      ]
    },
    {
      "page": "GateFinder",
      "title": "GateFinder",
      "topics": [
        "GateFinder"
      ]
    },
    {
      "page": "GatingProjection-class",
      "title": "Class '\"GatingProjection\"'",
      "topics": [
        "GatingProjection",
        "GatingProjection-class",
        "plot,GatingProjection,ANY-method",
        "plot,matrix,GatingProjection-method"
      ]
    },
    {
      "page": "LPSData",
      "title": "LPSData",
      "topics": [
        "LPSData",
        "marker.names",
        "prop.markers",
        "rawdata"
      ]
    },
    {
      "page": "plot.GateFinder",
      "title": "plot.GateFinder",
      "topics": [
        "plot.GateFinder"
      ]
    }
  ],
  "_rundeps": [
    "BH",
    "Biobase",
    "BiocGenerics",
    "biocmake",
    "cpp11",
    "cytolib",
    "deldir",
    "DEoptimR",
    "diptest",
    "dir.expiry",
    "filelock",
    "flowCore",
    "flowFP",
    "flowViz",
    "generics",
    "hexbin",
    "IDPmisc",
    "interp",
    "jpeg",
    "KernSmooth",
    "lattice",
    "latticeExtra",
    "MASS",
    "matrixStats",
    "mvoutlier",
    "png",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "Rhdf5lib",
    "robustbase",
    "RProtoBufLib",
    "S4Vectors",
    "sgeostat",
    "sp",
    "splancs"
  ],
  "_vignettes": [
    {
      "source": "GateFinder.Rnw",
      "filename": "GateFinder.pdf",
      "title": "GateFinder",
      "engine": "utils::Sweave",
      "headings": [
        "Licensing",
        "Introduction",
        "Basic Functionality",
        "Advanced Parameters"
      ],
      "created": "2018-04-02 21:24:46",
      "modified": "2018-09-17 21:34:55",
      "commits": 3
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": false,
  "_nocasepkg": "gatefinder",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/GateFinder",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.32.0",
      "date": "2026-06-13T07:37:43.000Z",
      "distro": "noble",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "3d1e30909856a90f698bff705fd3fd6aedace4b16c99ff162d945d9b53e9aed4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.32.0",
      "date": "2026-06-13T07:38:39.000Z",
      "distro": "noble",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "feb7e61057e8d214af4468a139eadcc742dc153719ca2b1269afa63f1ce63974",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.32.0",
      "date": "2026-06-13T07:36:45.000Z",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "c51641614bf08f8904926e06639aa05cce148b4aecedcf3dea9984060bd9a5e3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.32.0",
      "date": "2026-06-13T07:36:31.000Z",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "aa6a409ffa9681021ea99e7975449956b14c0f0473afb1518cc144028b78be9d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.32.0",
      "date": "2026-06-13T07:37:12.000Z",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "fbf661a08b143334f7a4dc07ec49802500c34a14c2e0dd735a2cf6a412e67f63",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.32.0",
      "date": "2026-06-13T07:36:21.000Z",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "59cc6c7999a0dda23d15d66f6189fd039549cb32e63a237046b451104bdf2b56",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.32.0",
      "date": "2026-06-13T07:36:21.000Z",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "3af81f0424c1a371afb751be8f84c56e6c7feac8e4486a52f70e2173537e64fe",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.32.0",
      "date": "2026-06-13T07:36:26.000Z",
      "commit": "efe33220158350cd09459c729f82db71f77b6541",
      "fileid": "3ff2af3bc15dbff9c5b741cd79583b5d580efc8a17dacf629fddcbbf9a20d738",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27460435590"
    }
  ]
}