{
  "_id": "6abcb71b99f7aa8c6aa4ade1",
  "Package": "GeneSelectMMD",
  "Type": "Package",
  "Title": "Gene selection based on the marginal distributions of gene\nprofiles that characterized by a mixture of three-component\nmultivariate distributions",
  "Version": "2.56.0",
  "Date": "2020-04-03",
  "Author": "Jarrett Morrow <remdj@channing.harvard.edu>, Weiliang Qiu\n<weiliang.qiu@gmail.com>, Wenqing He <whe@stats.uwo.ca>,\nXiaogang Wang <stevenw@mathstat.yorku.ca>, Ross Lazarus\n<ross.lazarus@channing.harvard.edu>.",
  "Maintainer": "Weiliang Qiu <weiliang.qiu@gmail.com>",
  "Description": "Gene selection based on a mixture of marginal\ndistributions.",
  "License": "GPL (>= 2)",
  "Packaged": {
    "Date": "2026-09-29 09:44:33 UTC",
    "User": "root"
  },
  "biocViews": "DifferentialExpression",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:33:47 UTC",
  "RemoteUrl": "https://github.com/bioc/GeneSelectMMD",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
  "NeedsCompilation": "yes",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "GeneSelectMMD_2.56.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/e69dc9a9eaf7db1f3f6181a6c758ff39bed13a2e09cc21e042e0e1311355a989",
  "_filesize": 553843,
  "_sha256": "e69dc9a9eaf7db1f3f6181a6c758ff39bed13a2e09cc21e042e0e1311355a989",
  "_expires": "2027-01-07T11:04:23.000Z",
  "_created": "2026-09-29T09:44:33.000Z",
  "_published": "2026-09-30T07:15:39.542Z",
  "_bioccheck": {
    "error": 2,
    "warning": 2,
    "note": 15
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049",
  "_status": "success",
  "_upstream": "https://github.com/bioc/GeneSelectMMD",
  "_commit": {
    "id": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379627
  },
  "_maintainer": {
    "name": "Weiliang Qiu",
    "email": "weiliang.qiu@gmail.com",
    "login": "weiliang",
    "description": "",
    "uuid": 755168
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 109777699627,
      "time": 142,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11082151505"
    },
    {
      "job": 109777702077,
      "time": 143,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11024966908"
    },
    {
      "job": 109777701753,
      "time": 233,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11024527011"
    },
    {
      "job": 109777701791,
      "time": 147,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11024432683"
    },
    {
      "job": 109777701681,
      "time": 194,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11024992049"
    },
    {
      "job": 109777700085,
      "time": 137,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11082457224"
    },
    {
      "job": 109777702018,
      "time": 212,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11028807481"
    },
    {
      "job": 109777701575,
      "time": 178,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11029027931"
    },
    {
      "job": 109777701994,
      "time": 167,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11028502472"
    },
    {
      "job": 109777700340,
      "time": 195,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11024239292"
    },
    {
      "job": 109777702049,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11024691422"
    },
    {
      "job": 109777701711,
      "time": 190,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11025041627"
    },
    {
      "job": 109777701619,
      "time": 148,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11024239778"
    },
    {
      "job": 109777701815,
      "time": 95,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11024357849"
    },
    {
      "job": 109777701975,
      "time": 194,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11024716641"
    },
    {
      "job": 109777701719,
      "time": 88,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11025425575"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.13.2",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "limma",
      "role": "Imports"
    },
    {
      "package": "ALL",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "2.57.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "2.56.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "differentialexpression",
    "fortran",
    "glibc"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 470,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 592,
    "source": "https://www.bioconductor.org/packages/stats/bioc/GeneSelectMMD"
  },
  "_mentions": 1,
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GeneSelectMMD.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "errRates",
    "gsMMD",
    "gsMMD.default",
    "gsMMD2",
    "gsMMD2.default",
    "obtainResi",
    "plotHistDensity"
  ],
  "_help": [
    {
      "page": "errRates",
      "title": "Calculating FDR, FNDR, FPR, and FNR for a real microarray data set",
      "topics": [
        "errRates"
      ]
    },
    {
      "page": "gsMMD",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD"
      ]
    },
    {
      "page": "gsMMD.default",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD.default"
      ]
    },
    {
      "page": "gsMMD2",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD2"
      ]
    },
    {
      "page": "gsMMD2.default",
      "title": "Gene selection based on a mixture of marginal distributions",
      "topics": [
        "gsMMD2.default"
      ]
    },
    {
      "page": "obtainResi",
      "title": "Replace expression levels by the residuals of regression analysis to remove the confounding effects.",
      "topics": [
        "obtainResi"
      ]
    },
    {
      "page": "plotHistDensity",
      "title": "Plot of histogram and density estimate of the pooled gene expression levels.",
      "topics": [
        "plotHistDensity"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics",
    "limma",
    "MASS",
    "statmod"
  ],
  "_sysdeps": [
    {
      "shlib": "libgfortran",
      "package": "libgfortran5",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "fortran",
      "homepage": "http://gcc.gnu.org/",
      "description": "Runtime library for GNU Fortran applications"
    },
    {
      "shlib": "libmvec",
      "package": "libc6",
      "headers": "libc6-dev",
      "source": "glibc",
      "version": "2.43-2ubuntu2.4",
      "name": "glibc",
      "homepage": "https://www.gnu.org/software/libc/libc.html",
      "description": "GNU C Library: Shared libraries"
    }
  ],
  "_vignettes": [
    {
      "source": "gsMMD.Rnw",
      "filename": "gsMMD.pdf",
      "title": "Gene Selection based on a mixture of marginal distributions",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Methods",
        "Reparametrization",
        "Gene selection via GeneSelectMMD",
        "Error rates estimated for real microarray data sets",
        "Visualizing the fit of the model to a real microarray data set",
        "Efficiency improvements",
        "Discussion"
      ],
      "created": "2013-11-01 20:07:50",
      "modified": "2020-03-05 04:52:40",
      "commits": 2
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": false,
  "_nocasepkg": "geneselectmmd",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/GeneSelectMMD",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.56.0",
      "date": "2026-09-29T09:47:04.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/1b428a51e034fce8d86ab19a7d733795f13d96a8916ee6a3783bc29ef7fa3aea",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.56.0",
      "date": "2026-09-29T09:48:27.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/7e4265524b20d652f491daa1dd1ac59363cddac2c2f55ea6128959e9075af5fd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.56.0",
      "date": "2026-09-29T09:47:10.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/880c1c384db6cf219990511217b6370a86b26766589f5c1029c889f4b374a8c6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.56.0",
      "date": "2026-09-29T09:47:50.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/8eefbfad62dda17ac8c5e6d702b25c3801eb18a5de5e29def598f70402b2717b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.56.0",
      "date": "2026-09-30T07:14:38.000Z",
      "arch": "aarch64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/7c115efd56f42936ef15786b2edd3ae7da12291a7278ac92a76de4bbd51c11da",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.56.0",
      "date": "2026-09-29T11:03:06.000Z",
      "arch": "x86_64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/4d496651db6327aaec302b408cb087c5a45cf840b494bd1294f62cebb47aea82",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.56.0",
      "date": "2026-09-29T11:02:29.000Z",
      "arch": "aarch64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/35ba61b2a436bb114969632d66f2ba1d7d009257cebcbd58e38540f0881d6391",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.56.0",
      "date": "2026-09-29T11:02:19.000Z",
      "arch": "x86_64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/a67554fe357eb89ba7e6d85c30f8beaad090bfc8e4f5908e463f3fb36714181d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.56.0",
      "date": "2026-09-29T09:46:47.000Z",
      "arch": "emscripten",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/9a7a7efd021ddfba5657e71ecde6f73a7107b0e29fddf15c080e2098f4df8a02",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.56.0",
      "date": "2026-09-29T09:47:31.000Z",
      "arch": "aarch64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/45828abbad81016e52d1b84e94038c4ce462d740cc4eec544cd9a8bb3085293a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.56.0",
      "date": "2026-09-29T09:46:06.000Z",
      "arch": "x86_64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/faa13e255be6c30765220c075c259aea183ce1886ab6ffcac2ae51ab96dd69aa",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.56.0",
      "date": "2026-09-29T09:45:53.000Z",
      "arch": "x86_64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/ff063ff434b87036cfef622e163214f3d8ca0fde4b922583ad89b3de3c1ce8f4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.56.0",
      "date": "2026-09-29T09:47:42.000Z",
      "arch": "aarch64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/820e2e77af4e8a4173fb50188c767fea6255aa844858caeec4c6d2fc03df7739",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.56.0",
      "date": "2026-09-29T09:45:45.000Z",
      "arch": "x86_64",
      "commit": "6a28f02754efedd96ed960cef22ec6c2b404a8f5",
      "fileid": "https://r2.ropensci.org/f38ca6e503fb2853172d9c607f28a8ba1ae9c40528175ff1adf01bfeb59eb69e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36550774049"
    }
  ]
}