{
  "_id": "6a1938deacfb0bcc41dd3813",
  "Package": "Herper",
  "Type": "Package",
  "Title": "The Herper package is a simple toolset to install and manage\nconda packages and environments from R",
  "Version": "1.22.0",
  "Authors@R": "c(person(\"Matt\", \"Paul\", , \"matthew.paul.2006@gmail.com\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-3020-7729\")),\nperson(\"Thomas\", \"Carroll\", , \"tc.infomatics@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0073-1714\")),\nperson(\"Doug\", \"Barrows\", , \"doug.barrows@gmail.com\", role = c(\"aut\")),\nperson(\"Kathryn\", \"Rozen-Gagnon\", , \"krozen@rockefeller.edu\", role = c(\"ctb\")))",
  "Description": "Many tools for data analysis are not available in R, but\nare present in public repositories like conda. The Herper\npackage provides a comprehensive set of functions to interact\nwith the conda package managament system. With Herper users can\ninstall, manage and run conda packages from the comfort of\ntheir R session. Herper also provides an ad-hoc approach to\nhandling external system requirements for R packages. For\npeople developing packages with python conda dependencies we\nrecommend using basilisk\n(https://bioconductor.org/packages/release/bioc/html/basilisk.html)\nto internally support these system requirments pre-hoc.",
  "URL": "https://github.com/RockefellerUniversity/Herper",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "VignetteBuilder": "knitr",
  "biocViews": "Infrastructure, Software",
  "Config/pak/sysreqs": "libpng-dev python3",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:54:08 UTC",
  "RemoteUrl": "https://github.com/bioc/Herper",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 06:21:26 UTC",
    "User": "root"
  },
  "Author": "Matt Paul [aut] (ORCID: <https://orcid.org/0000-0002-3020-7729>),\nThomas Carroll [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0073-1714>),\nDoug Barrows [aut],\nKathryn Rozen-Gagnon [ctb]",
  "Maintainer": "Thomas Carroll <tc.infomatics@gmail.com>",
  "MD5sum": "56254de8b88fb78a2c8afc354ecfdeb6",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "Herper_1.22.0.tar.gz",
  "_fileid": "717ed3e5a8b13dc9839276b02890409d0f5f33da589b95053f393eb151b8430f",
  "_filesize": 306063,
  "_sha256": "717ed3e5a8b13dc9839276b02890409d0f5f33da589b95053f393eb151b8430f",
  "_created": "2026-05-29T06:21:26.000Z",
  "_published": "2026-05-29T06:57:34.441Z",
  "_jobs": [
    {
      "job": 78448942589,
      "time": 152,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7284441673"
    },
    {
      "job": 78448942621,
      "time": 348,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7284486665"
    },
    {
      "job": 78448942585,
      "time": 161,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7284443354"
    },
    {
      "job": 78448942601,
      "time": 105,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7284903786"
    },
    {
      "job": 78448942642,
      "time": 83,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7284903217"
    },
    {
      "job": 78448589679,
      "time": 179,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284407090"
    },
    {
      "job": 78448942608,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284432854"
    },
    {
      "job": 78448942597,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7284430782"
    },
    {
      "job": 78448942610,
      "time": 87,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7284427422"
    },
    {
      "job": 78448942591,
      "time": 115,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7284433547"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 13
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/Herper",
  "_commit": {
    "id": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380848
  },
  "_maintainer": {
    "name": "Thomas Carroll",
    "email": "tc.infomatics@gmail.com",
    "login": "thomascarroll",
    "description": "Director of Bioinformatics Resource Center- The Rockefeller University",
    "uuid": 5750801,
    "orcid": "0000-0002-0073-1714"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "reticulate",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "rjson",
      "role": "Imports"
    },
    {
      "package": "withr",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-29",
      "n": 2
    },
    {
      "week": "2025-30",
      "n": 3
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.23.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.22.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "infrastructure",
    "software"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "matthew-paul-2006",
      "count": 247,
      "uuid": 23037538
    },
    {
      "user": "thomascarroll",
      "count": 101,
      "uuid": 5750801
    },
    {
      "user": "dougbarrows",
      "count": 23,
      "uuid": 25552623
    },
    {
      "user": "nturaga",
      "count": 8,
      "uuid": 2746443
    },
    {
      "user": "jwokaty",
      "count": 6,
      "uuid": 1744257
    },
    {
      "user": "ziwei-c",
      "count": 3,
      "uuid": 70220202
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 373,
    "source": "https://www.bioconductor.org/packages/stats/bioc/Herper"
  },
  "_devurl": "https://github.com/rockefelleruniversity/herper",
  "_searchresults": 85,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Herper.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rockefelleruniversity/herper",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "conda_search",
    "export_CondaEnv",
    "import_CondaEnv",
    "install_CondaSysReqs",
    "install_CondaTools",
    "list_CondaEnv",
    "list_CondaPkgs",
    "local_CondaEnv",
    "with_CondaEnv"
  ],
  "_help": [
    {
      "page": "search_conda",
      "title": "Search package availability",
      "topics": [
        "conda_search"
      ]
    },
    {
      "page": "SaveEnvironments",
      "title": "Export Conda environment.",
      "topics": [
        "export_CondaEnv",
        "import_CondaEnv"
      ]
    },
    {
      "page": "install_CondaSysReqs",
      "title": "Install Conda requirements listed in the System Requirement field of description",
      "topics": [
        "install_CondaSysReqs"
      ]
    },
    {
      "page": "install_CondaTools",
      "title": "Install Conda requirements.",
      "topics": [
        "install_CondaTools"
      ]
    },
    {
      "page": "ListCondaEnvironments",
      "title": "List Conda environments.",
      "topics": [
        "list_CondaEnv"
      ]
    },
    {
      "page": "ListCondaPackages",
      "title": "List Conda packages.",
      "topics": [
        "list_CondaPkgs"
      ]
    },
    {
      "page": "UseEnvironments",
      "title": "Use Conda environments.",
      "topics": [
        "local_CondaEnv",
        "with_CondaEnv"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/Herper/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "here",
    "jsonlite",
    "lattice",
    "Matrix",
    "png",
    "rappdirs",
    "Rcpp",
    "RcppTOML",
    "reticulate",
    "rjson",
    "rlang",
    "rprojroot",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "QuickStart.Rmd",
      "filename": "QuickStart.html",
      "title": "Herper Quick Start Guide",
      "author": "Matt Paul - mpaul@rockefeller.edu",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Install Conda packages with install_CondaTools.",
        "Install R package dependencies with install_CondaSysReqs.",
        "Acknowledgements",
        "Session Information"
      ],
      "created": "2020-09-10 22:39:17",
      "modified": "2022-08-31 22:22:52",
      "commits": 13
    }
  ],
  "_score": 6.628388930050312,
  "_indexed": false,
  "_nocasepkg": "herper",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/Herper",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.22.0",
      "date": "2026-05-29T06:26:58.000Z",
      "distro": "noble",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "34ce002e7e4f3e068332811447bfe6fe856336a37d6e128e7d50defc02655eae",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.22.0",
      "date": "2026-05-29T06:23:52.000Z",
      "distro": "noble",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "973205f32c2a24c0c082589b6a63c03e5da3c4a9dabb47a161e7e848f8dd03c4",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.22.0",
      "date": "2026-05-29T06:56:56.000Z",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "8515539353bb1fedde8457c17d22407f2660d6ba215ed3d77f083423399a68c9",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.22.0",
      "date": "2026-05-29T06:56:58.000Z",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "07fad6e14240fae1fba39c0df964c04e1d09ee1117643b48bd34464f27da65fa",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.22.0",
      "date": "2026-05-29T06:23:34.000Z",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "105734f557f5c49212782cc95d09882949fec38ca5a3552ea50eeb2ad368b8be",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.22.0",
      "date": "2026-05-29T06:22:50.000Z",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "6caf70f57fdb261f2cd2969093cf788ea525000f676d9b8233f5e80497a5b253",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.22.0",
      "date": "2026-05-29T06:22:39.000Z",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "0097c6a1be80d8f16dac19ef19fbe75d8506ce9636a1c2535da5898ed39c17b9",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.22.0",
      "date": "2026-05-29T06:22:58.000Z",
      "commit": "0114f67e1aaf22f91776b66f48ca50dc7c3e19c3",
      "fileid": "31714ef923f1e6538b2632dbd8722062b6710fb9405c74811c1b1bfe671e6f60",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621577532"
    }
  ]
}