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  "Package": "HiTC",
  "Type": "Package",
  "Title": "High Throughput Chromosome Conformation Capture analysis",
  "Description": "The HiTC package was developed to explore high-throughput\n'C' data such as 5C or Hi-C. Dedicated R classes as well as\nstandard methods for quality controls, normalization,\nvisualization, and further analysis are also provided.",
  "Version": "1.56.0",
  "Date": "2025-07-22",
  "Author": "Nicolas Servant",
  "Maintainer": "Nicolas Servant <nicolas.servant@curie.fr>",
  "License": "Artistic-2.0",
  "Collate": "AllGenerics.R HTCexp-class.R HTClist-class.R qualityControl.R\nmapC.R mapC_tracks.R binningC.R export.R import.R pca.R\nnormalize_5C.R normalize_hiC.R tads.R deprecated.R",
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    "normPerReads",
    "normPerTrans",
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    "removeIntervals",
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    "setIntervalScale",
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      ],
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      "tojson": false
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    {
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      "class": [
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      ],
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      "page": "binningC",
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        "binningC"
      ]
    },
    {
      "page": "CQC",
      "title": "Quality Control for high-throughput 'C' experiment",
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        "CQC"
      ]
    },
    {
      "page": "directionalityIndex",
      "title": "Directionality index calculation",
      "topics": [
        "directionalityIndex"
      ]
    },
    {
      "page": "discretize",
      "title": "Transform matrix of counts data into discrete matrix",
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      ]
    },
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      "topics": [
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      "title": "Export 'HTCexp' object",
      "topics": [
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      ]
    },
    {
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      ]
    },
    {
      "page": "getAnnotatedRestrictionSites",
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    {
      "page": "getExpectedCounts",
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      ]
    },
    {
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      ]
    },
    {
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      "topics": [
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      ]
    },
    {
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      "title": "Class 'HTCexp'",
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        "detail",
        "detail,HTCexp-method",
        "detail-methods",
        "divide",
        "divide,HTCexp,HTCexp-method",
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        "forceSymmetric,HTCexp,missing-method",
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        "normPerExpected-methods",
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        "normPerReads-methods",
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        "normPerTrans,HTCexp,HTCexp,HTCexp-method",
        "normPerTrans-methods",
        "normPerZscore-defunct",
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        "plot,HTCexp,HTCexp-method",
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      "page": "importC",
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      "page": "intervalsDist",
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    },
    {
      "page": "mapC",
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        "mapC,HTCexp,HTCexp-method",
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        "MEF",
        "Nora_5C"
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