{ "_id": "6acdfe3ea14063b82c3ae254", "Package": "IdeoViz", "Type": "Package", "Title": "Plots data (continuous/discrete) along chromosomal ideogram", "Version": "1.48.0", "Date": "2024-02-15", "Author": "Shraddha Pai , Jingliang Ren", "Maintainer": "Shraddha Pai ", "biocViews": "Visualization,Microarray", "Description": "Plots data associated with arbitrary genomic intervals\nalong chromosomal ideogram.", "License": "GPL-2", "RoxygenNote": "6.1.1", "Config/pak/sysreqs": "make libbz2-dev liblzma-dev libxml2-dev libssl-dev\nxz-utils zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:39:53 UTC", "RemoteUrl": "https://github.com/bioc/IdeoViz", "RemoteRef": "RELEASE_3_23", "RemoteSha": "1c868ddff86f0e74cad968bdc8f1916716042112", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-13 08:59:26 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "IdeoViz_1.48.0.tar.gz", "_fileid": "https://r2.ropensci.org/4125e117e077a029dfa2d4874b810b40783e91eef5a71c5d1ac28f55c6a99337", "_filesize": 547363, "_sha256": "4125e117e077a029dfa2d4874b810b40783e91eef5a71c5d1ac28f55c6a99337", "_expires": "2027-01-21T09:47:40.000Z", "_created": "2026-10-13T08:59:26.000Z", "_published": "2026-10-13T09:47:42.485Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 5, "note": 14 }, "_upstream": "https://github.com/bioc/IdeoViz", "_commit": { "id": "1c868ddff86f0e74cad968bdc8f1916716042112", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379993 }, "_maintainer": { "name": "Shraddha Pai", "email": "shraddha.pai@utoronto.ca", "login": "shraddhapai", "linkedin": "in/shraddhapai", "description": "Computational biologist. {Genomics, Data Science} for Precision Medicine. Lab head, @RealPaiLab; \nAssistant Professor, University of Toronto", "uuid": 7502338 }, "_distro": "resolute", "_jobs": [ { "job": 115215052103, "time": 179, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11800128132" }, { "job": 115215051987, "time": 358, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11800436911" }, { "job": 115215052166, "time": 286, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11799439569" }, { "job": 115215052247, "time": 191, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "11802226804" }, { "job": 115215052232, "time": 228, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11802490990" }, { "job": 115213618608, "time": 213, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11799373921" }, { "job": 115215052113, "time": 117, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11800565340" }, { "job": 115215052086, "time": 183, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11799698154" }, { "job": 115215052164, "time": 190, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11799988283" }, { "job": 115215052254, "time": 180, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11799763563" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "IRanges", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "RColorBrewer", "role": "Depends" }, { "package": "rtracklayer", "role": "Depends" }, { "package": "graphics", "role": "Depends" }, { "package": "GenomeInfoDb", "role": "Depends" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.49.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.48.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "visualization", "microarray" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 584, "source": "https://www.bioconductor.org/packages/stats/bioc/IdeoViz" }, "_mentions": 3, "_searchresults": 25, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/IdeoViz.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "avgByBin", "getBins", "getIdeo", "plotChromValuePair", "plotOnIdeo" ], "_datasets": [ { "name": "binned_fullGenome", "title": "Data for example 3.", "object": "binned_fullGenome", "file": "binned_fullGenome.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "binned_multiSeries", "title": "Data for vignette example 1.", "object": "binned_multiSeries", "file": "binned_multiSeries.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "binned_singleSeries", "title": "Data for example 2.", "object": "binned_singleSeries", "file": "binned_singleSeries.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "GSM733664_broadPeaks", "title": "Data for vignette example 4.", "object": "GSM733664_broadPeaks", "file": "GSM733664_broadPeaks.txt.gz", "class": [ "data.frame" ], "fields": [ "chrom", "chromStart", "chromEnd", "name", "score", "strand", "signalValue", "pValue", "qValue" ], "rows": 14825, "table": true, "tojson": true }, { "name": "hg18_ideo", "title": "Ideogram table for hg18", "object": "hg18_ideo", "file": "hg18_ideo.txt.gz", "class": [ "data.frame" ], "fields": [ "chrom", "chromStart", "chromEnd", "name", "gieStain" ], "rows": 862, "table": true, "tojson": true }, { "name": "wins", "title": "Data for vignette example 1.", "object": "examples", "file": "examples.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "wins", "title": "Data for vignette example 1.", "object": "wins", "file": "wins.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "wins_discrete", "title": "Data for example 2.", "object": "examples", "file": "examples.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "wins_discrete", "title": "Data for example 2.", "object": "wins_discrete", "file": "wins_discrete.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "wins_entiregenome", "title": "Data for example 3.", "object": "examples", "file": "examples.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "wins_entiregenome", "title": "Data for example 3.", "object": "wins_entiregenome", "file": "wins_entiregenome.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "IdeoViz-package", "title": "Plots continuous or discrete data along chromosomal ideogram", "topics": [ "IdeoViz-package" ] }, { "page": "avgByBin", "title": "Aggregates data by genomic bins", "topics": [ "avgByBin" ] }, { "page": "binned_fullGenome", "title": "Data for example 3.", "topics": [ "binned_fullGenome" ] }, { "page": "binned_multiSeries", "title": "Data for vignette example 1.", "topics": [ "binned_multiSeries" ] }, { "page": "binned_singleSeries", "title": "Data for example 2.", "topics": [ "binned_singleSeries" ] }, { "page": "getBins", "title": "getBins", "topics": [ "getBins" ] }, { "page": "getIdeo", "title": "Download ideogram table from UCSC", "topics": [ "getIdeo" ] }, { "page": "GSM733664_broadPeaks", "title": "Data for vignette example 4.", "topics": [ "GSM733664_broadPeaks" ] }, { "page": "hg18_ideo", "title": "Ideogram table for hg18", "topics": [ "hg18_ideo" ] }, { "page": "plotChromValuePair", "title": "Base function which plots the ideogram and superimposed data for a single chromosome. plotOnIdeo() calls this function and stacks the resulting output.", "topics": [ "plotChromValuePair" ] }, { "page": "plotOnIdeo", "title": "Plot data superimposed on chromosomal ideogram", "topics": [ "plotOnIdeo" ] }, { "page": "wins", "title": "Data for vignette example 1.", "topics": [ "wins" ] }, { "page": "wins_discrete", "title": "Data for example 2.", "topics": [ "wins_discrete" ] }, { "page": "wins_entiregenome", "title": "Data for example 3.", "topics": [ "wins_entiregenome" ] } ], "_readme": "https://github.com/bioc/IdeoViz/raw/RELEASE_3_23/README.md", "_rundeps": [ "abind", "askpass", "BH", "Biobase", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bitops", "cigarillo", "codetools", "cpp11", "crayon", "curl", "DelayedArray", "formatR", "futile.logger", "futile.options", "generics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "httr", "IRanges", "jsonlite", "lambda.r", "lattice", "Matrix", "MatrixGenerics", "matrixStats", "mime", "openssl", "R6", "RColorBrewer", "RCurl", "restfulr", "Rhtslib", "rjson", "Rsamtools", "rtracklayer", "S4Arrays", "S4Vectors", "Seqinfo", "snow", "SparseArray", "SummarizedExperiment", "sys", "UCSC.utils", "XML", "XVector", "yaml" ], "_score": 3.8750612633917, "_indexed": false, "_nocasepkg": "ideoviz", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/IdeoViz", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.48.0", "date": "2026-10-13T09:04:44.000Z", "distro": "resolute", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/b1ceaaecc3aca01276d9bbd8ea151590971f320a826e6d2036690ffb1df3a931", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" }, { "r": "4.6.1", "os": "linux", "version": "1.48.0", "date": "2026-10-13T09:03:42.000Z", "distro": "resolute", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/cffd239fdd6086abe1f25ab91d208632d514a0d90ba49a409fec6b4f66ddaa36", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" }, { "r": "4.5.3", "os": "mac", "version": "1.48.0", "date": "2026-10-13T09:45:09.000Z", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/c7373b6201edd87cb4c2d8727501b6768341d6d7313a89545835a4fa738c1b02", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" }, { "r": "4.6.1", "os": "mac", "version": "1.48.0", "date": "2026-10-13T09:45:33.000Z", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/e5a7acb3da354f38606b722d9f816af633c27930711d167a33ebb461b1499fa1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" }, { "r": "4.6.0", "os": "wasm", "version": "1.48.0", "date": "2026-10-13T09:02:09.000Z", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/178469c398bf8187fc37cc18d9d518fdac5f5a46b83832aa067d4c0b14315381", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" }, { "r": "4.7.0", "os": "win", "version": "1.48.0", "date": "2026-10-13T09:01:26.000Z", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/7dbf2067a7cf86e023e36f0c3652542e3deeb77a8fa9ca4e84f5722bde6445a2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" }, { "r": "4.5.3", "os": "win", "version": "1.48.0", "date": "2026-10-13T09:01:41.000Z", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/c63472bc4d1e0d6ae20fda1ac224a297d68c5732ce817552e8371b65d5d4016c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" }, { "r": "4.6.1", "os": "win", "version": "1.48.0", "date": "2026-10-13T09:01:27.000Z", "commit": "1c868ddff86f0e74cad968bdc8f1916716042112", "fileid": "https://r2.ropensci.org/51049de74e4680fcabf0e7681f737b61492b26961e877a13c4bb8e16122bbb98", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38372738024" } ] }