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  "Title": "Visualize all edges within a KEGG pathway and overlay LINCS data",
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  "Author": "Shana White",
  "Maintainer": "Shana White <vandersm@mail.uc.edu>, Mario Medvedovic\n<medvedm@ucmail.uc.edu>",
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    "datarepresentation",
    "thirdpartyclient",
    "cellbiology",
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    "pathways",
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    "expand_KEGG_mappings",
    "generate_mappings",
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    "get_graph_object",
    "get_KGML",
    "KEGG_lincs",
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    "KL_compare",
    "node_mapping_info",
    "overlap_info",
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    "refine_mappings",
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    {
      "page": "add_edge_data",
      "title": "Annotate KEGG edge mappings with user data",
      "topics": [
        "add_edge_data"
      ]
    },
    {
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      "title": "Send graph to Cytoscape via CyREST",
      "topics": [
        "cyto_vis"
      ]
    },
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      "title": "Prepare edges for mapping",
      "topics": [
        "edge_mapping_info"
      ]
    },
    {
      "page": "expand_KEGG_edges",
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      "topics": [
        "expand_KEGG_edges"
      ]
    },
    {
      "page": "expand_KEGG_mappings",
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      "topics": [
        "expand_KEGG_mappings"
      ]
    },
    {
      "page": "generate_mappings",
      "title": "The 'boilerplate' for this package's desired graph style",
      "topics": [
        "generate_mappings"
      ]
    },
    {
      "page": "get_fisher_info",
      "title": "Perform Fisher's Exact test for edges in pathway",
      "topics": [
        "get_fisher_info"
      ]
    },
    {
      "page": "get_graph_object",
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      "topics": [
        "get_graph_object"
      ]
    },
    {
      "page": "get_KGML",
      "title": "Download and parse KGML file",
      "topics": [
        "get_KGML"
      ]
    },
    {
      "page": "KEGG_lincs",
      "title": "Combines all other package functions for one-step pathway visualization",
      "topics": [
        "KEGG_lincs"
      ]
    },
    {
      "page": "keggerize_edges",
      "title": "Add in edges to map documented in other pathways",
      "topics": [
        "keggerize_edges"
      ]
    },
    {
      "page": "KEGGlincs",
      "title": "KEGGlincs: an R package designed to explore the edges in KEGG pathways",
      "topics": [
        "KEGGlincs-package",
        "KEGGlincs"
      ]
    },
    {
      "page": "KL_compare",
      "title": "Combines all other package functions for one-step cell line comparison",
      "topics": [
        "KL_compare"
      ]
    },
    {
      "page": "node_mapping_info",
      "title": "Prepare nodes for mapping",
      "topics": [
        "node_mapping_info"
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    },
    {
      "page": "overlap_info",
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      "topics": [
        "overlap_info"
      ]
    },
    {
      "page": "path_genes_by_cell_type",
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      "topics": [
        "path_genes_by_cell_type"
      ]
    },
    {
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        "refine_mappings"
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    },
    {
      "page": "tidy_edge",
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      ]
    },
    {
      "page": "toCytoscape",
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      ]
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