{
  "_id": "6a194b98acfb0bcc41ddcdae",
  "Package": "MBCB",
  "Version": "1.66.0",
  "Date": "2010-05-10",
  "Title": "MBCB (Model-based Background Correction for Beadarray)",
  "Description": "This package provides a model-based background correction\nmethod, which incorporates the negative control beads to\npre-process Illumina BeadArray data.",
  "Author": "Yang Xie <Yang.Xie@UTSouthwestern.edu>",
  "Maintainer": "Bo Yao <Bo.Yao@UTSouthwestern.edu>",
  "License": "GPL (>=2)",
  "URL": "https://qbrc.swmed.edu/",
  "biocViews": "Microarray, Preprocessing",
  "Config/pak/sysreqs": "tcl tk tk-dev tk-table",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:34:44 UTC",
  "RemoteUrl": "https://github.com/bioc/MBCB",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 07:13:50 UTC",
    "User": "root"
  },
  "MD5sum": "41ffc9c121b23462d9b26f3be953bc44",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "MBCB_1.66.0.tar.gz",
  "_fileid": "3d3f71ca519e7d5b7c86f12ef28c657af48ae32d2158d7859a6e4e465c7dd0d4",
  "_filesize": 438447,
  "_sha256": "3d3f71ca519e7d5b7c86f12ef28c657af48ae32d2158d7859a6e4e465c7dd0d4",
  "_created": "2026-05-29T07:13:50.000Z",
  "_published": "2026-05-29T08:17:28.818Z",
  "_jobs": [
    {
      "job": 78455267447,
      "time": 143,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7285188368"
    },
    {
      "job": 78455267500,
      "time": 180,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7285198792"
    },
    {
      "job": 78455267554,
      "time": 182,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7285199058"
    },
    {
      "job": 78455267444,
      "time": 99,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7286220006"
    },
    {
      "job": 78455267469,
      "time": 71,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7286209779"
    },
    {
      "job": 78454940788,
      "time": 152,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7285149270"
    },
    {
      "job": 78455267484,
      "time": 135,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7285185956"
    },
    {
      "job": 78455267566,
      "time": 73,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7285169899"
    },
    {
      "job": 78455267460,
      "time": 67,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7285167795"
    },
    {
      "job": 78455267503,
      "time": 93,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7285175477"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 16
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/MBCB",
  "_commit": {
    "id": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379684
  },
  "_maintainer": {
    "name": "Bo Yao",
    "email": "bo.yao@utsouthwestern.edu",
    "login": "burgler",
    "description": "",
    "uuid": 7306848
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.9.0",
      "role": "Depends"
    },
    {
      "package": "tcltk",
      "role": "Depends"
    },
    {
      "package": "tcltk2",
      "role": "Depends"
    },
    {
      "package": "preprocessCore",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.67.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.66.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "preprocessing"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 384,
    "source": "https://www.bioconductor.org/packages/stats/bioc/MBCB"
  },
  "_mentions": 2,
  "_searchresults": 12,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MBCB.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "bg.mcmc",
    "bg.rma",
    "mbcb.correct",
    "mbcb.gui",
    "mbcb.main",
    "mbcb.parseFile"
  ],
  "_datasets": [
    {
      "name": "expressionSignal",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "object": "MBCBExpressionData",
      "file": "MBCBExpressionData.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "g.1",
        "g.2",
        "g.3",
        "g.4"
      ],
      "rows": 1033,
      "table": true,
      "tojson": true
    },
    {
      "name": "negativeControl",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "object": "MBCBExpressionData",
      "file": "MBCBExpressionData.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "x.1",
        "x.2",
        "x.3"
      ],
      "rows": 1655,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bg.mcmc",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "topics": [
        "bg.mcmc"
      ]
    },
    {
      "page": "bg.rma",
      "title": "MBCB - Robust Multi-Array Average Background Correction for Illumina Beadarray",
      "topics": [
        "bg.rma"
      ]
    },
    {
      "page": "mbcb.correct",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.correct"
      ]
    },
    {
      "page": "mbcb.gui",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.gui"
      ]
    },
    {
      "page": "mbcb.main",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.main"
      ]
    },
    {
      "page": "mbcb.parseFile",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "mbcb.parseFile"
      ]
    },
    {
      "page": "MBCBExpressionData",
      "title": "MBCB - Bayesian Background Correction for Illumina Beadarray",
      "topics": [
        "expressionSignal",
        "MBCBExpressionData",
        "negativeControl"
      ]
    },
    {
      "page": "printMBCBOutput",
      "title": "MBCB - Model-Based Background Correction for Illumina Beadarray",
      "topics": [
        "printMBCBOutput"
      ]
    }
  ],
  "_rundeps": [
    "preprocessCore",
    "tcltk2"
  ],
  "_vignettes": [
    {
      "source": "MBCB.Rnw",
      "filename": "MBCB.pdf",
      "title": "MBCB",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:13:55",
      "modified": "2013-11-01 20:13:55",
      "commits": 1
    }
  ],
  "_score": 3.6812412373755876,
  "_indexed": false,
  "_nocasepkg": "mbcb",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/MBCB",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.66.0",
      "date": "2026-05-29T07:16:51.000Z",
      "distro": "noble",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "f90f7b1aed974ce41a198ca85d70185508148f4458f0e237dc9e5f8e9baac85e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.66.0",
      "date": "2026-05-29T07:16:50.000Z",
      "distro": "noble",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "34c885ea79077fd8f5af2924ada7e3b639d6aa1183bd6a3d0b7046388e522d6d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.66.0",
      "date": "2026-05-29T08:16:54.000Z",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "fbb86d418269cd3fb2ffaf2000d13959474d75f7b5ae68aed303d6c8c59fea8b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.66.0",
      "date": "2026-05-29T08:16:19.000Z",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "9aa4818865e1e26016aa591da810712febb82d01ddefd8ce1ca7e7350523c8c9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.66.0",
      "date": "2026-05-29T07:16:19.000Z",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "6d292532bcc93a6e6e2c910733e4be15f7c3570ae72cb1c1801f4cebcd4a7315",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.66.0",
      "date": "2026-05-29T07:14:58.000Z",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "07216043826db300d4b32525239a9afce1358f321095334ed1552ee6a71469f0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.66.0",
      "date": "2026-05-29T07:14:50.000Z",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "77327452403d0a3e7d2c15b45393428cb9339f52d5abb2aa5d0227ac5caab413",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.66.0",
      "date": "2026-05-29T07:15:13.000Z",
      "commit": "5d7cece31be8efb8cbaec0ab7990d723b4755157",
      "fileid": "3f2614a67f7a21766d917c33d732bde6f100b5c76b0f7f769be87185b5a21bdb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26623581662"
    }
  ]
}