{ "_id": "6a31030e3efcd9bda4353384", "Package": "MGFM", "Type": "Package", "Title": "Marker Gene Finder in Microarray gene expression data", "Version": "1.46.0", "Date": "2014-09-21", "Author": "Khadija El Amrani", "Maintainer": "Khadija El Amrani ", "Description": "The package is designed to detect marker genes from\nMicroarray gene expression data sets", "biocViews": "Genetics, GeneExpression, Microarray", "License": "GPL-3", "LazyData": "yes", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:39:47 UTC", "RemoteUrl": "https://github.com/bioc/MGFM", "RemoteRef": "RELEASE_3_23", "RemoteSha": "743e226df82e16d132e510dfc52463ec35942809", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-16 07:44:47 UTC", "User": "root" }, "MD5sum": "e7e5531a20cff8efe606a0ec315dd865", "_user": "bioc-release", "_type": "src", "_file": "MGFM_1.46.0.tar.gz", "_fileid": "dda884ad120061adef5ebd9b362faeb29c9a6116dfa4c032af65eb987474d5e0", "_filesize": 3547087, "_sha256": "dda884ad120061adef5ebd9b362faeb29c9a6116dfa4c032af65eb987474d5e0", "_created": "2026-06-16T07:44:47.000Z", "_published": "2026-06-16T08:02:22.174Z", "_jobs": [ { "job": 81606249467, "time": 180, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7660455932" }, { "job": 81606249499, "time": 259, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7660480470" }, { "job": 81606249478, "time": 264, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7660481688" }, { "job": 81606249461, "time": 122, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7660669755" }, { "job": 81606249492, "time": 135, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7660697417" }, { "job": 81605370375, "time": 312, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7660395037" }, { "job": 81606249460, "time": 136, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7660442004" }, { "job": 81606249569, "time": 157, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7660446899" }, { "job": 81606249490, "time": 221, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7660468530" }, { "job": 81606249507, "time": 167, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7660450609" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/MGFM", "_commit": { "id": "743e226df82e16d132e510dfc52463ec35942809", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379987 }, "_maintainer": { "name": "Khadija El Amrani", "email": "khadija.el-amrani@charite.de", "login": "khadija-a", "description": "", "uuid": 19383250 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "AnnotationDbi", "role": "Depends" }, { "package": "annotate", "role": "Depends" }, { "package": "hgu133a.db", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.47.0", "bioc": "3.24" }, { "branch": "release", "version": "1.46.0", "bioc": "3.23" } ], "_topics": [ "genetics", "geneexpression", "microarray" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 440, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_mentions": 5, "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MGFM.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "getHtmlpage", "getMarkerGenes" ], "_datasets": [ { "name": "ds2.mat", "title": "Microarray gene expression data set", "object": "ds2.mat", "class": [ "matrix", "array" ], "fields": [ "liver", "liver", "liver", "lung", "lung", "lung", "brain", "brain", "brain", "kidney", "kidney", "kidney", "heart", "heart", "heart" ], "rows": 22283, "table": true, "tojson": true } ], "_help": [ { "page": "MGFM-package", "title": "Marker Gene Finder in Microarray gene expression data", "topics": [ "MGFM-package", "MGFM" ] }, { "page": "ds2.mat", "title": "Microarray gene expression data set", "topics": [ "ds2.mat" ] }, { "page": "getHtmlpage", "title": "Function to build HTML pages to show marker genes", "topics": [ "getHtmlpage" ] }, { "page": "getMarkerGenes", "title": "Marker Gene Detection", "topics": [ "getMarkerGenes" ] } ], "_rundeps": [ "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "generics", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "memoise", "mime", "openssl", "pkgconfig", "png", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sys", "vctrs", "XML", "xtable", "XVector" ], "_vignettes": [ { "source": "MGFM.Rnw", "filename": "MGFM.pdf", "title": "Using MGFM", "engine": "utils::Sweave", "headings": [ "Introduction", "Requirements", "Contents of the package", "Example data", "Hierachical clustering", "Normalization", "Marker search", "MGFM algorithm details", "Conclusion", "R sessionInfo" ], "created": "2014-09-27 00:29:42", "modified": "2014-09-27 00:29:42", "commits": 1 } ], "_score": 4.477121254719663, "_indexed": false, "_nocasepkg": "mgfm", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/MGFM", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.46.0", "date": "2026-06-16T07:49:51.000Z", "distro": "noble", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "2fef36432395b4cca786d9716d4ca6f21194a9b214cdfd48e91d1d0eabadcb49", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" }, { "r": "4.6.0", "os": "linux", "version": "1.46.0", "date": "2026-06-16T07:49:54.000Z", "distro": "noble", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "dd7bfa42288d40d7ac1cfdcd0c771ed3fbc7b2201c3bf3659eb0538732e1df8c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" }, { "r": "4.5.3", "os": "mac", "version": "1.46.0", "date": "2026-06-16T07:59:55.000Z", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "218178a7ecc83955ce09cff8e4c52ca5dcdafdde83ed3606c8b288cd7aac6dba", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" }, { "r": "4.6.0", "os": "mac", "version": "1.46.0", "date": "2026-06-16T08:01:08.000Z", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "0029867c8fed042282aa9c631b7422ea660c6fb4131d5db57277cd681c9669c1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" }, { "r": "4.6.0", "os": "wasm", "version": "1.46.0", "date": "2026-06-16T07:49:04.000Z", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "381064688aba4edabc2f7d320fa26d8fca98b525955f4af32e73432ef0782f95", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" }, { "r": "4.7.0", "os": "win", "version": "1.46.0", "date": "2026-06-16T07:48:17.000Z", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "e77a3a5d0bedab5a3d5685d5270e495f6ffd9ed7df19781cde8940e7f9ec55ba", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" }, { "r": "4.5.3", "os": "win", "version": "1.46.0", "date": "2026-06-16T07:48:20.000Z", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "d18892d7f13b3cb9fae7b60466b563560575b123b5e810328518d98c5752cb81", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" }, { "r": "4.6.0", "os": "win", "version": "1.46.0", "date": "2026-06-16T07:48:14.000Z", "commit": "743e226df82e16d132e510dfc52463ec35942809", "fileid": "8662a4dbaa3901e2a9aa5d2fa739b4b0c48da9c2adb6e8241e2c6420ed15d838", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27602098252" } ] }