{
  "_id": "6a129e1bacfb0bcc41d0fa57",
  "Package": "MGFR",
  "Type": "Package",
  "Title": "Marker Gene Finder in RNA-seq data",
  "Version": "1.38.0",
  "Author": "Khadija El Amrani",
  "Maintainer": "Khadija El Amrani <a.khadija@gmx.de>",
  "Description": "The package is designed to detect marker genes from\nRNA-seq data.",
  "biocViews": "ImmunoOncology, Genetics, GeneExpression, RNASeq",
  "License": "GPL-3",
  "LazyData": "yes",
  "NeedsCompilation": "no",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libxml2-dev libssl-dev\nzlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:43:47 UTC",
  "RemoteUrl": "https://github.com/bioc/MGFR",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
  "Packaged": {
    "Date": "2026-05-24 06:35:02 UTC",
    "User": "root"
  },
  "MD5sum": "5e2b9dce6cad60b729b2179d7fba89d1",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "MGFR_1.38.0.tar.gz",
  "_fileid": "f46e822972bbfe65681b0ff86e86ec5f40aa0b19a477c0ff6a889e7a08153681",
  "_filesize": 1800338,
  "_sha256": "f46e822972bbfe65681b0ff86e86ec5f40aa0b19a477c0ff6a889e7a08153681",
  "_created": "2026-05-24T06:35:02.000Z",
  "_published": "2026-05-24T06:43:39.573Z",
  "_jobs": [
    {
      "job": 77577676542,
      "time": 146,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7182932521"
    },
    {
      "job": 77577676555,
      "time": 340,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7182951719"
    },
    {
      "job": 77577676553,
      "time": 331,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182950986"
    },
    {
      "job": 77577676556,
      "time": 357,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7182953453"
    },
    {
      "job": 77577676549,
      "time": 341,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182951748"
    },
    {
      "job": 77577489428,
      "time": 229,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182918834"
    },
    {
      "job": 77577676545,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182929849"
    },
    {
      "job": 77577676570,
      "time": 474,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7182964759"
    },
    {
      "job": 77577676573,
      "time": 379,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7182955827"
    },
    {
      "job": 77577676565,
      "time": 292,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182946637"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 13
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/MGFR",
  "_commit": {
    "id": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380227
  },
  "_maintainer": {
    "name": "Khadija El Amrani",
    "email": "a.khadija@gmx.de"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "biomaRt",
      "role": "Imports"
    },
    {
      "package": "annotate",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "immunooncology",
    "genetics",
    "geneexpression",
    "rnaseq"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 398,
    "source": "https://www.bioconductor.org/packages/stats/bioc/MGFR"
  },
  "_mentions": 1,
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MGFR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "getMarkerGenes.rnaseq",
    "getMarkerGenes.rnaseq.html"
  ],
  "_datasets": [
    {
      "name": "ref.mat",
      "title": "RNA-seq gene expression data set",
      "object": "ref.mat",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "brain",
        "brain",
        "brain",
        "heart",
        "heart",
        "heart",
        "kidney",
        "kidney",
        "kidney",
        "liver",
        "liver",
        "liver",
        "lung",
        "lung",
        "lung"
      ],
      "rows": 35287,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "MGFR-package",
      "title": "Marker Gene Finder in RNA-seq data",
      "topics": [
        "MGFR-package",
        "MGFR"
      ]
    },
    {
      "page": "getMarkerGenes.rnaseq",
      "title": "Marker Gene Detection",
      "topics": [
        "getMarkerGenes.rnaseq"
      ]
    },
    {
      "page": "getMarkerGenes.rnaseq.html",
      "title": "Marker Gene Detection",
      "topics": [
        "getMarkerGenes.rnaseq.html"
      ]
    },
    {
      "page": "ref.mat",
      "title": "RNA-seq gene expression data set",
      "topics": [
        "ref.mat"
      ]
    }
  ],
  "_rundeps": [
    "annotate",
    "AnnotationDbi",
    "askpass",
    "Biobase",
    "BiocFileCache",
    "BiocGenerics",
    "biomaRt",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "fastmap",
    "filelock",
    "generics",
    "glue",
    "hms",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XML",
    "xml2",
    "xtable",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "MGFR.Rnw",
      "filename": "MGFR.pdf",
      "title": "Using MGFR",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2016-07-05 21:50:25",
      "modified": "2019-02-20 23:38:41",
      "commits": 2
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": false,
  "_nocasepkg": "mgfr",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/MGFR",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-05-24T06:38:14.000Z",
      "distro": "noble",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "acebde3dfc11cc8ead8856c2ecf117ee534555ff8c0b6b04d931a94159a9ff0c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-05-24T06:37:41.000Z",
      "distro": "noble",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "3816268c6490768f14954e6326863a58a7ce1d8df12fdefa68918aa3ab1d35f4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-05-24T06:36:42.000Z",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "aa938a11c88a5ba8c521c9e8a1ec856c2340a662cd22ff3c23ca63b79874cf0e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-05-24T06:37:09.000Z",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "4f3330b3cdf6d132ca4a37c3ba7395a5ee15d441d325f74d0cb3c6ed56f0d685",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.38.0",
      "date": "2026-05-24T06:37:23.000Z",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "b64ea8b20b8bfd63802b9a9e7140c5d13c3ce9ecb3d31c693d0fb8da1004a5ec",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-05-24T06:36:30.000Z",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "4dce2b55a69920562cc070e59288453ade1a3ec5e94457279d88d9c32667ce10",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-05-24T06:36:22.000Z",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "dc73a41e89e9572c30b3b2fbd767b0a7ceae35cbb5601387dcc75e3798353877",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-05-24T06:36:25.000Z",
      "commit": "53e3224008eb64efb7769a2c515e9e0f2febaa81",
      "fileid": "f889ea4e0d3ba5589d3a2909176de459fa5d9877233d1f0740f3901843a3bb15",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354069918"
    }
  ]
}