{
  "_id": "6aca1db8fe5cc25786e84d65",
  "Package": "MUGAExampleData",
  "Type": "Package",
  "Title": "Example {M}ouse {U}niversal {G}enotyping {A}rray data for genome\nreconstruction and quantitative trait locus mapping.",
  "Version": "1.32.0",
  "Date": "2013-10-02",
  "Author": "Daniel Gatti <Dan.Gatti@jax.org>",
  "Maintainer": "Daniel Gatti <Dan.Gatti@jax.org>",
  "Description": "This package contains example data for the MUGA array that\nis used by the R package DOQTL.",
  "biocViews": "ExperimentData, Mus_musculus_Data",
  "License": "GPL-3",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:27:10 UTC",
  "RemoteUrl": "https://github.com/bioc/MUGAExampleData",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "2a789276d1bb604d4d4aac475a084bd8cf0f0479",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 11:05:22 UTC",
    "User": "root"
  },
  "_user": "bioc-release",
  "_type": "src",
  "_file": "MUGAExampleData_1.32.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/c5584e4209256cd3d81ed636474caf1f6634584c67e07d45971388ff8badbe94",
  "_filesize": 92943700,
  "_sha256": "c5584e4209256cd3d81ed636474caf1f6634584c67e07d45971388ff8badbe94",
  "_expires": "2027-01-18T11:12:50.000Z",
  "_created": "2026-10-10T11:05:22.000Z",
  "_published": "2026-10-10T11:12:56.405Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047042504",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 2,
    "warning": 2,
    "note": 9
  },
  "_upstream": "https://github.com/bioc/MUGAExampleData",
  "_commit": {
    "id": "2a789276d1bb604d4d4aac475a084bd8cf0f0479",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379230
  },
  "_maintainer": {
    "name": "Daniel Gatti",
    "email": "dan.gatti@jax.org",
    "login": "dmgatti",
    "description": "",
    "uuid": 540344
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114199493820,
      "time": 117,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11668431387"
    },
    {
      "job": 114199493798,
      "time": 152,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11668900269"
    },
    {
      "job": 114199493826,
      "time": 213,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11668111934"
    },
    {
      "job": 114198606380,
      "time": 313,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11668685271"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10.0",
      "role": "Depends"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.33.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.32.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "experimentdata",
    "mus_musculus_data",
    "datapkg"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 8,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/MUGAExampleData.html"
  ],
  "_cranurl": false,
  "_exports": [],
  "_datasets": [
    {
      "name": "call.rate.batch",
      "title": "Call rates and batch information for Svenson et.al samples.",
      "object": "call.rate.batch",
      "file": "call.rate.batch.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sample",
        "call.rate",
        "batch"
      ],
      "rows": 141,
      "table": true,
      "tojson": true
    },
    {
      "name": "FinalReport1",
      "title": "Allele call and intensity data for the first set of MUGA samples.",
      "object": "FinalReport1",
      "file": "FinalReport1.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "FinalReport2",
      "title": "Allele call and intensity data for the second set of MUGA samples.",
      "object": "FinalReport2",
      "file": "FinalReport2.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "geno",
      "title": "Allele calls for Svenson et.al samples.",
      "object": "geno",
      "file": "geno.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 141,
      "table": true,
      "tojson": true
    },
    {
      "name": "model.probs",
      "title": "Founder haplotype probabilities for the Svenson et.al. data.",
      "object": "model.probs",
      "file": "model.probs.rda",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "pheno",
      "title": "Phenotype data for Svenson et.al samples.",
      "object": "pheno",
      "file": "pheno.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Sample",
        "Sex",
        "Gen",
        "Diet",
        "Coat.Color",
        "WBC1",
        "RBC1",
        "mHGB1",
        "HCT1",
        "MCV1",
        "MCH1",
        "MCHC1",
        "CHCM1",
        "RDW1",
        "HDW1",
        "PLT1",
        "MPV1",
        "perc.NEUT1",
        "perc.LYM1",
        "perc.MONO1",
        "perc.EOS1",
        "Retic1",
        "cHGB1",
        "ct.NEUT1",
        "ct.LYM1",
        "ct.MONO1",
        "ct.EOS1",
        "WBC2",
        "RBC2",
        "mHGB2",
        "HCT2",
        "MCV2",
        "MCH2",
        "MCHC2",
        "CHCM2",
        "RDW2",
        "HDW2",
        "PLT2",
        "MPV2",
        "perc.NEUT2",
        "perc.LYM2",
        "perc.MONO2",
        "perc.EOS2",
        "Retic2",
        "cHGB2",
        "ct.NEUT2",
        "ct.LYM2",
        "ct.MONO2",
        "ct.EOS2",
        "HR",
        "HRV",
        "PQ",
        "PR",
        "QRS",
        "QTC",
        "RR",
        "ST",
        "QTc.dispersion",
        "pNN50...6ms.",
        "rMSSD",
        "CHOL1",
        "TG1",
        "HDLD1",
        "NEFA1",
        "Lipase1",
        "Glucose1",
        "Phosphorus1",
        "Calcium1",
        "GLDH1",
        "BUN1",
        "FRUC1",
        "CHOL2",
        "TG2",
        "HDLD2",
        "NEFA2",
        "Glucose2",
        "Phosphorus2",
        "Calcium2",
        "GLDH2",
        "BUN2",
        "non.fast.Phosphorous",
        "non.fast.Calcium",
        "non.fast.ALB2",
        "non.fast.CREX",
        "Subject.Length1",
        "Weight1",
        "BMD1",
        "BMC1",
        "B.Area1",
        "T.Area1",
        "X..Fat1",
        "TTM1",
        "LTM1",
        "Length2",
        "Weight2",
        "BMD2",
        "BMC2",
        "B.Area2",
        "T.Area2",
        "X..Fat2",
        "TTM2",
        "LTM2",
        "urine.microalbumin1",
        "urine.Glucose1",
        "urine.creatinine1",
        "urine.microalbumin2",
        "urine.Glucose2",
        "urine.creatinine2",
        "heart.wt",
        "spleen.wt",
        "kidney.wt.L",
        "kidney.wt.R",
        "BW.3",
        "BW.4",
        "BW.5",
        "BW.6",
        "BW.7",
        "BW.8",
        "BW.9",
        "BW.10",
        "BW.11",
        "BW.12",
        "BW.13",
        "BW.14",
        "BW.15",
        "BW.16",
        "BW.17",
        "BW.18",
        "BW.19",
        "BW.20",
        "BW.21",
        "BW.22",
        "BW.23",
        "BW.24",
        "BW.25",
        "BW.26",
        "BW.27",
        "BW.28",
        "BW.29",
        "BW.30",
        "INSULIN",
        "LEPTIN"
      ],
      "rows": 149,
      "table": true,
      "tojson": true
    },
    {
      "name": "Samples1",
      "title": "Sample list for the first MUGA data set.",
      "object": "Samples1",
      "file": "Samples1.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "Samples2",
      "title": "Sample list for the second MUGA data set.",
      "object": "Samples2",
      "file": "Samples2.rda",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "x",
      "title": "X allele intensities for Svenson et.al samples.",
      "object": "x",
      "file": "x.rda",
      "class": [
        "data.frame"
      ],
      "fields": [],
      "rows": 141,
      "table": true,
      "tojson": true
    },
    {
      "name": "y",
      "title": "Y allele intensities for Svenson et.al samples.",
      "object": "y",
      "file": "y.rda",
      "class": [
        "data.frame"
      ],
      "fields": [],
      "rows": 141,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "call.rate.batch",
      "title": "Call rates and batch information for Svenson et.al samples.",
      "topics": [
        "call.rate.batch"
      ]
    },
    {
      "page": "FinalReport1",
      "title": "Allele call and intensity data for the first set of MUGA samples.",
      "topics": [
        "FinalReport1"
      ]
    },
    {
      "page": "FinalReport2",
      "title": "Allele call and intensity data for the second set of MUGA samples.",
      "topics": [
        "FinalReport2"
      ]
    },
    {
      "page": "geno",
      "title": "Allele calls for Svenson et.al samples.",
      "topics": [
        "geno"
      ]
    },
    {
      "page": "model.probs",
      "title": "Founder haplotype probabilities for the Svenson et.al. data.",
      "topics": [
        "model.probs"
      ]
    },
    {
      "page": "MUGAExampleData-package",
      "title": "Example Mouse Universal Genotyping Array data for genome reconstruction and quantitative trait locus mapping.",
      "topics": [
        "MUGAExampleData"
      ]
    },
    {
      "page": "pheno",
      "title": "Phenotype data for Svenson et.al samples.",
      "topics": [
        "pheno"
      ]
    },
    {
      "page": "Samples1",
      "title": "Sample list for the first MUGA data set.",
      "topics": [
        "Samples1"
      ]
    },
    {
      "page": "Samples2",
      "title": "Sample list for the second MUGA data set.",
      "topics": [
        "Samples2"
      ]
    },
    {
      "page": "x",
      "title": "X allele intensities for Svenson et.al samples.",
      "topics": [
        "x"
      ]
    },
    {
      "page": "y",
      "title": "Y allele intensities for Svenson et.al samples.",
      "topics": [
        "y"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "MUGAExampleData.Rnw",
      "filename": "MUGAExampleData.pdf",
      "title": "User Manual",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Data Description"
      ],
      "created": "2014-06-17 00:12:48",
      "modified": "2014-06-17 00:12:48",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": false,
  "_nocasepkg": "mugaexampledata",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/MUGAExampleData",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.32.0",
      "date": "2026-10-10T11:10:51.000Z",
      "distro": "resolute",
      "commit": "2a789276d1bb604d4d4aac475a084bd8cf0f0479",
      "fileid": "https://r2.ropensci.org/52fa07a0926eec7ed72826b6632fc428e323da86be720e3221d03da9f0a5a897",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047042504"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.32.0",
      "date": "2026-10-10T11:11:48.000Z",
      "distro": "resolute",
      "commit": "2a789276d1bb604d4d4aac475a084bd8cf0f0479",
      "fileid": "https://r2.ropensci.org/baaeb8b5864dd628a556b42170a5eaef7a776e3338c70d079940cb2d0813d7e6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047042504"
    }
  ]
}