{
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  "Package": "MetMashR",
  "Type": "Package",
  "Title": "Metabolite Mashing with R",
  "Version": "1.6.0",
  "Authors@R": "c(\nperson(\nc(\"Gavin\",\"Rhys\"),\n\"Lloyd\",\nrole=c(\"aut\",\"cre\"),\nemail=\"g.r.lloyd@bham.ac.uk\",\ncomment = c(ORCID = \"0000-0001-7989-6695\")\n),\nperson(\nc(\"Ralf\",\"Johannes\", \"Maria\"),\n\"Weber\",\nrole=c(\"aut\"),\nemail=\"r.j.weber@bham.ac.uk\")\n)",
  "Description": "A package to merge, filter sort, organise and otherwise\nmash together metabolite annotation tables. Metabolite\nannotations can be imported from multiple sources (software)\nand combined using workflow steps based on S4 class templates\nderived from the `struct` package. Other modular workflow steps\nsuch as filtering, merging, splitting, normalisation and\nrest-api queries are included.",
  "License": "GPL-3",
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  "BugReports": "https://github.com/computational-metabolomics/MetMashR/issues",
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  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:53 UTC",
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    "hmdb_lookup",
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    "is_writable",
    "kegg_lookup",
    "lcms_table",
    "lipidmaps_lookup",
    "ls_source",
    "model_apply",
    "mspurity_source",
    "MTox700plus_database",
    "mwb_compound_lookup",
    "mwb_refmet_database",
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    "mz_match",
    "mzrt_match",
    "normalise_lipids",
    "normalise_strings",
    "nothing",
    "opsin_lookup",
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    "pivot_columns",
    "prioritise",
    "prioritise_columns",
    "pubchem_compound_lookup",
    "pubchem_property_lookup",
    "pubchem_structure",
    "pubchem_widget",
    "racemic_dictionary",
    "rdata_database",
    "rds_cache",
    "rds_database",
    "read_database",
    "read_source",
    "remove_columns",
    "rename_columns",
    "required_cols",
    "rest_api",
    "rt_match",
    "select_columns",
    "select_exact",
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    "select_match",
    "select_max",
    "select_min",
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    "split_records",
    "sqlite_database",
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    "tripeptide_dictionary",
    "unique_records",
    "unzip_before_cache",
    "upset_intersections",
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    "upset_min_size",
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      "topics": [
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      "topics": [
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      "concept": [
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        "annotation sources"
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      "topics": [
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      "topics": [
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      "topics": [
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      "concept": [
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        "annotation tables"
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    },
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      "topics": [
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      "title": "Annotation venn chart",
      "topics": [
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        "annotation databases"
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        "database"
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      "topics": [
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        "annotation sources",
        "annotation tables"
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        "chart_plot,annotation_bar_chart,annotation_source-method",
        "chart_plot,annotation_histogram,annotation_source-method",
        "chart_plot,annotation_histogram2d,annotation_source-method",
        "chart_plot,annotation_pie_chart,annotation_source-method",
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        "chart_plot,annotation_venn_chart,annotation_source-method",
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      "title": "Check for columns in an 'annotation_source'",
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        "check_for_columns",
        "check_for_columns,annotation_source-method"
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      "title": "Query ClassyFire database",
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        "classyfire_lookup"
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      "title": "Combine columns",
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        "combine_columns"
      ]
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      "title": "Combine annotation records (rows)",
      "topics": [
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      ]
    },
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      "page": "combine_records_helper_functions",
      "title": "Combine records helper functions",
      "topics": [
        "combine_records_helper_functions",
        "compute_mean",
        "compute_median",
        "compute_mode",
        "count_records",
        "fuse",
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        "nothing",
        "prioritise",
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        "select_grade",
        "select_match",
        "select_max",
        "select_min"
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    {
      "page": "combine_sources",
      "title": "Combine annotation sources (tables)",
      "topics": [
        "combine_sources"
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    },
    {
      "page": "CompoundDb_source",
      "title": "Import CompDB source",
      "topics": [
        "CompoundDb_source"
      ]
    },
    {
      "page": "compute_column",
      "title": "Compute a column",
      "topics": [
        "compute_column"
      ]
    },
    {
      "page": "compute_record",
      "title": "Compute a value for a record",
      "topics": [
        "compute_record"
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    },
    {
      "page": "database_lookup",
      "title": "ID lookup by database",
      "topics": [
        "database_lookup"
      ]
    },
    {
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      "title": "NCBI E-utils query",
      "topics": [
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    },
    {
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      "title": "Excel database",
      "concept": [
        "annotation databases"
      ],
      "topics": [
        "excel_database"
      ]
    },
    {
      "page": "filter_labels",
      "title": "Filter by factor labels",
      "topics": [
        "filter_labels"
      ]
    },
    {
      "page": "filter_na",
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