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These scores represent\nthe magnitude and direction of transcriptional change within\nthe pathway, along with estimated p-values.MetaPhOR then uses\nthese scores to visualize metabolic profiles within and between\nsamples through a variety of mechanisms, including: bubble\nplots, heatmaps, and pathway models.", "License": "Artistic-2.0", "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "biocViews": "Metabolomics, RNASeq, Pathways, GeneExpression,\nDifferentialExpression, KEGG, Sequencing, Microarray", "VignetteBuilder": "knitr", "SystemRequirements": "Cytoscape (>= 3.9.0) for the cytoPath() examples", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev python3 libzmq3-dev\nzlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:59:12 UTC", "RemoteUrl": "https://github.com/bioc/MetaPhOR", "RemoteRef": "RELEASE_3_23", "RemoteSha": 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