{ "_id": "6aca1fa1fe5cc25786e84f15", "Package": "MutSeqRData", "Title": "Experimental Data for MutSeqR Examples", "Version": "1.0.0", "Authors@R": "c(\nperson(\"Annette E.\", \"Dodge\",\nemail = \"annette.dodge@hc-sc.gc.ca\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-0446-9055\")\n),\nperson(\"Andrew\", \"Williams\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-7637-7686\")\n),\nperson(\"Danielle P.M.\", \"LeBlanc\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-3847-8371\")\n),\nperson(\"David M.\", \"Schuster\",\nrole = \"aut\",\ncomment = c(ORCID = \"0009-0001-6316-4358\")\n),\nperson(\"Elena\", \"Esina\",\nrole = \"aut\",\ncomment = c(ORCID = \"0009-0002-3443-378X\")\n),\nperson(\"Clint C.\", \"Valentine\", role = \"aut\"),\nperson(\"Jesse J.\", \"Salk\", role = \"aut\"),\nperson(\"Alexander Y.\", \"Maslov\", role = \"aut\"),\nperson(\"Christopher\", \"Bradley\", role = \"aut\"),\nperson(\"Carole L.\", \"Yauk\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-6725-3454\")\n),\nperson(\"Francesco\", \"Marchetti\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-9435-4867\")\n),\nperson(\"Matthew J.\", \"Meier\",\nemail = \"matthew.meier@hc-sc.gc.ca\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8199-8754\")\n),\nperson(\"Geronimo\", \"Matteo\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0003-0819-4471\")\n)\n)", "Description": "Experimental data for use with the MutSeqR vignette and\nexamples. This dataset is taken from LeBlanc et al., 2022. 24\nMutaMouse animals were exposed to one of three doses of\nbenzo[a]pyrene or a vehicle control for 28 days by oral gavage.\n28 days after the end of the exposure, bone marrow of the\nfemurs was harvested from euthanized animals. DNA extraction\nwas conducted via DNeasy Blood and Tissue kit. DNA samples were\nsequenced using TwinStrand's Duplex Sequencing on the Mouse\nMutagenesis Panel at > 10,000 depth. The Mouse Mutagenesis\nPanel comprises 20 2.4kb genomic targets with one located on\neach mouse autosome (two on chromosome 1). Pre-processing of\nsequence reads was redone since publication using an updated\nversion of TwinStrand's Mutagenesis App (v. 3.20.1) which\nproduced tabular mutation data files for each sample. Data\ncontained herein are only those required for running MutSeqR\nexamples and vignette.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "biocViews": "ExperimentHub, Mus_musculus_Data, Genome, Somatic,\nSequencingData", "RoxygenNote": "7.3.1", "VignetteBuilder": "knitr", "BugReports": "https://github.com/EHSRB-BSRSE-Bioinformatics/MutSeqRData/issues", "URL": "https://github.com/EHSRB-BSRSE-Bioinformatics/MutSeqRData/", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:38:12 UTC", "RemoteUrl": "https://github.com/bioc/MutSeqRData", "RemoteRef": "RELEASE_3_23", "RemoteSha": "5b776d05a660a2b71ebc208f8aa3a4dbcdc6a89a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:17:39 UTC", "User": "root" }, "Author": "Annette E. Dodge [aut] (ORCID: ),\nAndrew Williams [aut] (ORCID: ),\nDanielle P.M. LeBlanc [aut] (ORCID:\n),\nDavid M. Schuster [aut] (ORCID:\n),\nElena Esina [aut] (ORCID: ),\nClint C. Valentine [aut],\nJesse J. Salk [aut],\nAlexander Y. Maslov [aut],\nChristopher Bradley [aut],\nCarole L. Yauk [aut] (ORCID: ),\nFrancesco Marchetti [aut] (ORCID:\n),\nMatthew J. Meier [aut, cre] (ORCID:\n),\nGeronimo Matteo [ctb] (ORCID: )", "Maintainer": "Matthew J. Meier ", "_user": "bioc-release", "_type": "src", "_file": "MutSeqRData_1.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/c3205815dfd3a6bafd5c55d3412b19b1f0d9cdacc368a311845b7a8ba8bf458e", "_filesize": 94127, "_sha256": "c3205815dfd3a6bafd5c55d3412b19b1f0d9cdacc368a311845b7a8ba8bf458e", "_expires": "2027-01-18T11:21:02.000Z", "_created": "2026-10-10T11:17:39.000Z", "_published": "2026-10-10T11:21:05.058Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047718022", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 2, "note": 7 }, "_upstream": "https://github.com/bioc/MutSeqRData", "_commit": { "id": "5b776d05a660a2b71ebc208f8aa3a4dbcdc6a89a", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379892 }, "_maintainer": { "name": "Matthew J. Meier", "email": "matthew.meier@hc-sc.gc.ca", "login": "ehsrb-bsrse-admin", "description": "", "uuid": 154367715, "orcid": "0000-0001-8199-8754" }, "_distro": "resolute", "_jobs": [ { "job": 114201066926, "time": 109, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11668212633" }, { "job": 114201066997, "time": 171, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11668631253" }, { "job": 114201066983, "time": 160, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11668082841" }, { "job": 114200555158, "time": 177, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11667832695" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-50", "n": 1 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.1.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.0.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimenthub", "mus_musculus_data", "genome", "somatic", "sequencingdata", "datapkg" ], "_stars": 1, "_contributors": [ { "user": "annettedodge16", "count": 17, "uuid": 75439372 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/ehsrb-bsrse-bioinformatics/mutseqrdata", "_searchresults": 1, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/MutSeqRData.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [], "_help": [ { "page": "MutSeqRData", "title": "Supporting data for MutSeqR package", "topics": [ "MutSeqRData-package", "MutSeqRData" ] } ], "_readme": "https://github.com/bioc/MutSeqRData/raw/RELEASE_3_23/README.md", "_rundeps": [], "_vignettes": [ { "source": "Supporting_data_for_MutSeqR.Rmd", "filename": "Supporting_data_for_MutSeqR.html", "title": "Supporting data for the MutSeqR package", "author": "Annette E. 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