{
  "_id": "6aca20bbfe5cc25786e85007",
  "Package": "NestLink",
  "Type": "Package",
  "Title": "NestLink an R data package to guide through Engineered Peptide\nBarcodes for In-Depth Analyzes of Binding Protein Ensembles",
  "Authors@R": "c(person(\"Pascal\", \"Egloff\",\nemail = \"p.egloff@imm.uzh.ch\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-8948-3704\")),\nperson(\"Iwan\", \"Zimmermann\",\nemail = \"izimmermann@imm.uzh.ch\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0003-3476-4749\")),\nperson(\"Fabian M.\", \"Arnold\",\nrole = c(\"ctb\"),\nemail = \"mail@fabianarnold.com\"),\nperson(\"Cedric A.J.\", \"Hutter\",\nemail = \"chutter@imm.uzh.ch\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0002-8920-3343\")),\nperson(\"Damien\", \"Morger\",\nemail = \"damien.morger@rqmicro.com\"),\nperson(\"Lennart\", \"Opitz\",\nemail = \"lopitz@fgcz.ethz.ch\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7945-6737\")),\nperson(\"Lucy\", \"Poveda\",\nemail = \"lucy.poveda@fgcz.uzh.ch\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5291-5582\")),\nperson(\"Hans-Anton\", \"Keserue\",\nrole = c(\"ctb\"),\nemail = \"ha.keserue@rqmicro.com\"),\nperson(\"Christian\", \"Panse\",\nemail = \"cp@fgcz.ethz.ch\",\nrole = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0003-1975-3064\")),\nperson(\"Bernd\", \"Roschitzki\",\nemail = \"bernd.roschitzki@fgcz.uzh.ch\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-5756-9773\")),\nperson(\"Markus\", \"Seeger\",\nrole = c(\"aut\"),\nemail = \"m.seeger@imm.uzh.ch\",\ncomment = c(ORCID = \"0000-0003-1761-8571\")))",
  "Version": "1.28.0",
  "Description": "Provides next-generation sequencing (NGS) and mass\nspectrometry (MS) sample data, code snippets and replication\nmaterial used for developing NestLink. The NestLink approach is\na protein binder selection and identification technology able\nto biophysically characterize thousands of library members at\nonce without handling individual clones at any stage of the\nprocess. Data were acquired on NGS and MS platforms at the\nFunctional Genomics Center Zurich.",
  "License": "GPL",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "biocViews": "ExperimentHub, ExperimentData, SequencingData,\nMassSpectrometryData, ReproducibleResearch",
  "RoxygenNote": "6.1.1",
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  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:32:34 UTC",
  "RemoteUrl": "https://github.com/bioc/NestLink",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "7102e675cb295467666733af6eddf4ad8eeedc5a",
  "Packaged": {
    "Date": "2026-10-10 11:15:20 UTC",
    "User": "root"
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  "Author": "Pascal Egloff [aut] (ORCID: <https://orcid.org/0000-0001-8948-3704>),\nIwan Zimmermann [ctb] (ORCID: <https://orcid.org/0000-0003-3476-4749>),\nFabian M. Arnold [ctb],\nCedric A.J. Hutter [ctb] (ORCID:\n<https://orcid.org/0000-0002-8920-3343>),\nLennart Opitz [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-7945-6737>),\nLucy Poveda [ctb] (ORCID: <https://orcid.org/0000-0002-5291-5582>),\nHans-Anton Keserue [ctb],\nChristian Panse [aut, ctb] (ORCID:\n<https://orcid.org/0000-0003-1975-3064>),\nBernd Roschitzki [aut] (ORCID: <https://orcid.org/0000-0001-5756-9773>),\nMarkus Seeger [aut] (ORCID: <https://orcid.org/0000-0003-1761-8571>)",
  "Maintainer": "Lennart Opitz <lopitz@fgcz.ethz.ch>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "NestLink_1.28.0.tar.gz",
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  "_sha256": "33ed6b13f67e04b6889ffe0ed05e607be3acfb13641399c1fc40db5f31d891ca",
  "_expires": "2027-01-18T11:25:44.000Z",
  "_created": "2026-10-10T11:15:20.000Z",
  "_published": "2026-10-10T11:25:46.934Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047375070",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
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    "warning": 1,
    "note": 10
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  "_upstream": "https://github.com/bioc/NestLink",
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    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379554
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  "_maintainer": {
    "name": "Lennart Opitz",
    "email": "lopitz@fgcz.ethz.ch",
    "login": "opitzl",
    "description": "",
    "uuid": 9592717,
    "orcid": "0000-0001-7945-6737"
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    "compose_GPx10R",
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    "NB.unambiguous",
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    "runNGSAnalysis",
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  "_help": [
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      "page": "dot-ssrc.mascot",
      "title": "computes the correlation of predicted and measured retention time",
      "topics": [
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    },
    {
      "page": "compose_GPGx8cTerm",
      "title": "Compose a peptide with a defined AA sequence frequency",
      "topics": [
        "compose_GPGx8cTerm"
      ]
    },
    {
      "page": "compose_GPx10R",
      "title": "Compose a peptide with a defined AA sequence",
      "topics": [
        "compose_GPx10R"
      ]
    },
    {
      "page": "compose_GSx7cTerm",
      "title": "Compose a FlyCode GSx7cTerm Amino Acid Sequence",
      "topics": [
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    },
    {
      "page": "F255744",
      "title": "F255744 Mascot Search results",
      "topics": [
        "F255744"
      ]
    },
    {
      "page": "getExperimentHubFilename",
      "title": "getExperimentHubFilename",
      "topics": [
        "getExperimentHubFilename"
      ]
    },
    {
      "page": "getFC",
      "title": "Read FlyCodes (FCs)",
      "topics": [
        "getFC"
      ]
    },
    {
      "page": "getNB",
      "title": "Read NanoBodies (NBs)",
      "topics": [
        "getNB"
      ]
    },
    {
      "page": "nanobodyFlycodeLinking.as.fasta",
      "title": "Write FASTA",
      "topics": [
        "nanobodyFlycodeLinking.as.fasta"
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    },
    {
      "page": "nanobodyFlycodeLinking.summary",
      "title": "Object Summaries of S3 class 'nanobodyFlycodeLinking'",
      "topics": [
        "nanobodyFlycodeLinking.summary"
      ]
    },
    {
      "page": "NB.unambiguous",
      "title": "Determine unambiguous NBs",
      "topics": [
        "NB.unambiguous"
      ]
    },
    {
      "page": "NB.unique",
      "title": "make NB table unique",
      "topics": [
        "NB.unique"
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    },
    {
      "page": "PGexport",
      "title": "PGexport results",
      "topics": [
        "PGexport"
      ]
    },
    {
      "page": "plot_in_silico_LCMS_map",
      "title": "plot a LC-MS map of a given set of amino acid sequences",
      "topics": [
        "plot_in_silico_LCMS_map"
      ]
    },
    {
      "page": "runNGSAnalysis",
      "title": "NGS linkage workflow",
      "topics": [
        "runNGSAnalysis"
      ]
    },
    {
      "page": "twoPatternReadFilter",
      "title": "Filter input sequences for two patterns",
      "topics": [
        "twoPatternReadFilter"
      ]
    },
    {
      "page": "WU160118",
      "title": "WU160118 Mascot Search results",
      "topics": [
        "WU160118"
      ]
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  "_readme": "https://github.com/bioc/NestLink/raw/RELEASE_3_23/README.md",
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      "title": "Derive Peptide Flycodes by Conducting Random Experiment",
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        "Camera ready absolute table",
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      "headings": [
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        "Make Data (replaces make-data.R)",
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