{ "_id": "6aca1f70fe5cc25786e84ec9", "Package": "NetActivityData", "Type": "Package", "Title": "Data required for getting the gene set scores with NetActivity\npackage", "Version": "1.14.0", "Authors@R": "c(person(\"Carlos\", \"Ruiz-Arenas\", , \"carlos.ruiza@upf.edu\", role = c(\"aut\", \"cre\")))", "Description": "This package contains the weights from pre-trained shallow\nsparsely-connected autoencoders. This data is required for\ngetting the gene set scores with NetActivity package.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "false", "RoxygenNote": "7.2.1", "VignetteBuilder": "knitr", "biocViews": "ExperimentData, RepositoryData", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:36:27 UTC", "RemoteUrl": "https://github.com/bioc/NetActivityData", "RemoteRef": "RELEASE_3_23", "RemoteSha": "902e8768a448fd6f27aa16e47288346b0513f759", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:15:10 UTC", "User": "root" }, "Author": "Carlos Ruiz-Arenas [aut, cre]", "Maintainer": "Carlos Ruiz-Arenas ", "_user": "bioc-release", "_type": "src", "_file": "NetActivityData_1.14.0.tar.gz", "_fileid": "https://r2.ropensci.org/319ba32c53f079ff41c7a14e3d76516ed85d0d15880f98162beb80ea35ee28ed", "_filesize": 5139947, "_sha256": "319ba32c53f079ff41c7a14e3d76516ed85d0d15880f98162beb80ea35ee28ed", "_expires": "2027-01-18T11:20:12.000Z", "_created": "2026-10-10T11:15:10.000Z", "_published": "2026-10-10T11:20:15.525Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047603067", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 1, "note": 6 }, "_upstream": "https://github.com/bioc/NetActivityData", "_commit": { "id": "902e8768a448fd6f27aa16e47288346b0513f759", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379787 }, "_maintainer": { "name": "Carlos Ruiz-Arenas", "email": "carlos.ruiza@upf.edu" }, "_distro": "resolute", "_jobs": [ { "job": 114200818561, "time": 125, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11668302255" }, { "job": 114200818578, "time": 159, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11668132610" }, { "job": 114200818655, "time": 210, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11668017891" }, { "job": 114200238674, "time": 200, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668695821" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.15.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.14.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "repositorydata", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 25, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NetActivityData.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "gtex_gokegg", "title": "Weights of GO_KEGG model trained with GTEx samples", "object": "gtex_gokegg", "file": "gtex_gokegg.rda", "class": [ "matrix", "array" ], "fields": [], "rows": 1518, "table": true, "tojson": true }, { "name": "gtex_gokegg_annot", "title": "Annotation of GO_KEGG model trained with GTEx samples", "object": "gtex_gokegg_annot", "file": "gtex_gokegg_annot.rda", "class": [ "data.frame" ], "fields": [ "Term", "GeneSet", "Weights", "Weights_SYMBOL" ], "rows": 1518, "table": true, "tojson": true }, { "name": "tcga_gokegg", "title": "Weights of GO_KEGG model trained with TCGA samples", "object": "tcga_gokegg", "file": "tcga_gokegg.rda", "class": [ "matrix", "array" ], "fields": [], "rows": 1518, "table": true, "tojson": true }, { "name": "tcga_gokegg_annot", "title": "Annotation of GO_KEGG model trained with TCGA samples", "object": "tcga_gokegg_annot", "file": "tcga_gokegg_annot.rda", "class": [ "data.frame" ], "fields": [ "Term", "GeneSet", "Weights", "Weights_SYMBOL" ], "rows": 1518, "table": true, "tojson": true } ], "_help": [ { "page": "gtex_gokegg", "title": "Weights of GO_KEGG model trained with GTEx samples", "topics": [ "gtex_gokegg" ] }, { "page": "gtex_gokegg_annot", "title": "Annotation of GO_KEGG model trained with GTEx samples", "topics": [ "gtex_gokegg_annot" ] }, { "page": "NetActivityData", "title": "NetActivityData: data required for getting the gene set scores with NetActivity package", "topics": [ "NetActivityData" ] }, { "page": "tcga_gokegg", "title": "Weights of GO_KEGG model trained with TCGA samples", "topics": [ "tcga_gokegg" ] }, { "page": "tcga_gokegg_annot", "title": "Annotation of GO_KEGG model trained with TCGA samples", "topics": [ "tcga_gokegg_annot" ] } ], "_readme": "https://github.com/bioc/NetActivityData/raw/RELEASE_3_23/README.md", "_rundeps": [], "_vignettes": [ { "source": "NetActivityData.Rmd", "filename": "NetActivityData.html", "title": "NetActivityData", "author": "Carlos Ruiz Arenas", "engine": "knitr::rmarkdown", "headings": [ "Installation", "Introduction", "GTEx model", "TCGA model" ], "created": "2022-09-13 10:24:15", "modified": "2022-10-17 08:51:44", "commits": 4 } ], "_score": 4.8750612633917, "_indexed": false, "_nocasepkg": "netactivitydata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/NetActivityData", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.14.0", "date": "2026-10-10T11:18:45.000Z", "distro": "resolute", "commit": "902e8768a448fd6f27aa16e47288346b0513f759", "fileid": "https://r2.ropensci.org/086a727f70dd47b6d5a29487327eb2a1fc3acdb5661370da829183a60db8549c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047603067" }, { "r": "4.6.1", "os": "linux", "version": "1.14.0", "date": "2026-10-10T11:19:40.000Z", "distro": "resolute", "commit": "902e8768a448fd6f27aa16e47288346b0513f759", "fileid": "https://r2.ropensci.org/478222d555275be887062610ceeb9e7e8ec4c6257600caf276583b40ce0f5307", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047603067" } ] }