{
  "_id": "6aca1e1cfe5cc25786e84dc8",
  "Package": "OnassisJavaLibs",
  "Type": "Package",
  "Title": "OnassisJavaLibs, java libraries to run conceptmapper and\nsemantic similarity",
  "Version": "1.34.0",
  "Author": "Eugenia Galeota",
  "Authors@R": "person(\"Eugenia\", \"Galeota\",\nemail=\"eugenia.galeota@gmail.com\", role=c(\"aut\", \"cre\"))",
  "Maintainer": "Eugenia Galeota <eugenia.galeota@gmail.com>",
  "Description": "A package that contains java libraries to call\nconceptmapper and compute semnatic similarity from R",
  "License": "GPL-2",
  "VignetteBuilder": "rmarkdown, knitr",
  "SystemRequirements": "Java (>= 1.8)",
  "Encoding": "UTF-8",
  "biocViews": "ExperimentData",
  "NeedsCompilation": "no",
  "RoxygenNote": "6.0.1",
  "Config/pak/sysreqs": "make default-jdk",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:30:39 UTC",
  "RemoteUrl": "https://github.com/bioc/OnassisJavaLibs",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "1bb64f5e1bdf846364dd40642969e51b073dcd3b",
  "Packaged": {
    "Date": "2026-10-10 11:09:59 UTC",
    "User": "root"
  },
  "_user": "bioc-release",
  "_type": "src",
  "_file": "OnassisJavaLibs_1.34.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/995d80ce7122241d00f83f05880c73eb9c326a9bd485a28727d1d804fad5c121",
  "_filesize": 89268353,
  "_sha256": "995d80ce7122241d00f83f05880c73eb9c326a9bd485a28727d1d804fad5c121",
  "_expires": "2027-01-18T11:14:33.000Z",
  "_created": "2026-10-10T11:09:59.000Z",
  "_published": "2026-10-10T11:14:36.608Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047283763",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 2,
    "warning": 1,
    "note": 9
  },
  "_upstream": "https://github.com/bioc/OnassisJavaLibs",
  "_commit": {
    "id": "1bb64f5e1bdf846364dd40642969e51b073dcd3b",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379439
  },
  "_maintainer": {
    "name": "Eugenia Galeota",
    "email": "eugenia.galeota@gmail.com",
    "login": "eugeniaeueu",
    "linkedin": "in/eugenia-galeota-ba683517",
    "twitter": "@eugeniaeueu",
    "description": "Senior computational biologist | Single-cell and multi-omics data integration | Reproducible pipelines | Translational immunology. Computer science background",
    "uuid": 5869018
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114199792681,
      "time": 136,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11668186818"
    },
    {
      "job": 114199792684,
      "time": 176,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11668146973"
    },
    {
      "job": 114199792699,
      "time": 213,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11667957273"
    },
    {
      "job": 114199299004,
      "time": 172,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11667892021"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "rJava",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.35.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.34.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "experimentdata",
    "datapkg",
    "openjdk"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 0,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/OnassisJavaLibs.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [],
  "_help": [
    {
      "page": "OnassisJavaLibs",
      "title": "OnASSiSJavaLibs libraries for natural language processing and semantic similarity computation",
      "topics": [
        "OnassisJavaLibs-package",
        "OnassisJavaLibs"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/OnassisJavaLibs/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "rJava"
  ],
  "_sysdeps": [
    {
      "shlib": "libjvm",
      "package": "openjdk-25-jre-headless",
      "headers": "openjdk-25-jre-headless",
      "source": "openjdk",
      "version": "25.0.4.1+1-1~26.04.4",
      "name": "openjdk",
      "homepage": "https://openjdk.java.net/",
      "description": "OpenJDK Java runtime, using Hotspot JIT (headless)"
    }
  ],
  "_vignettes": [
    {
      "source": "OnassisJavaLibs.Rmd",
      "filename": "OnassisJavaLibs.html",
      "title": "OnassisJavaLibs: Java Libraries to support Onassis, Ontology Annotation and Semantic Similarity software",
      "author": "Eugenia Galeota",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Contents of the package",
        "Accessing and compiling the Java source code",
        "Use of the package",
        "Acknowledgements"
      ],
      "created": "2017-05-31 10:47:28",
      "modified": "2017-06-01 07:53:52",
      "commits": 4
    }
  ],
  "_score": 4,
  "_indexed": false,
  "_nocasepkg": "onassisjavalibs",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/OnassisJavaLibs",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.34.0",
      "date": "2026-10-10T11:13:07.000Z",
      "distro": "resolute",
      "commit": "1bb64f5e1bdf846364dd40642969e51b073dcd3b",
      "fileid": "https://r2.ropensci.org/10a69fdd929fe4334313a4e300b2de71ce419ce5596bbbc66121057a526149c9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047283763"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.34.0",
      "date": "2026-10-10T11:13:39.000Z",
      "distro": "resolute",
      "commit": "1bb64f5e1bdf846364dd40642969e51b073dcd3b",
      "fileid": "https://r2.ropensci.org/d36932ba5a36b907ef44168204563f796a14756cc9424e093eb05026b25ec88f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047283763"
    }
  ]
}