{ "_id": "6aca1ddffe5cc25786e84d85", "Package": "PREDAsampledata", "Title": "expression and copy number data on clear cell renal carcinoma\nsamples", "Version": "0.52.0", "Author": "I. Cifola et al. in Cristina Battaglia Lab, University of Milan", "Description": "Sample data for PREDA package. (annotations objects\nsynchronized with GeneAnnot custom CDFs version 2.2.0)", "Maintainer": "Francesco Ferrari ", "License": "Artistic-2.0", "biocViews": "ExperimentData, Tissue, CancerData, KidneyCancerData,\nMicroarrayData, TissueMicroarrayData, ArrayExpress", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:24:09 UTC", "RemoteUrl": "https://github.com/bioc/PREDAsampledata", "RemoteRef": "RELEASE_3_23", "RemoteSha": "e7d552797ef02e33a841c0750d0b46cf245dcbcb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:03:17 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "PREDAsampledata_0.52.0.tar.gz", "_fileid": "https://r2.ropensci.org/49c0eb1482c5a8b22645008bc424352e2581207779a418f088f3bce1de994c4f", "_filesize": 70050741, "_sha256": "49c0eb1482c5a8b22645008bc424352e2581207779a418f088f3bce1de994c4f", "_expires": "2027-01-18T11:13:31.000Z", "_created": "2026-10-10T11:03:17.000Z", "_published": "2026-10-10T11:13:35.702Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046823770", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 1, "note": 6 }, "_upstream": "https://github.com/bioc/PREDAsampledata", "_commit": { "id": "e7d552797ef02e33a841c0750d0b46cf245dcbcb", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379049 }, "_maintainer": { "name": "Francesco Ferrari", "email": "francesco.ferrari@ifom.eu", "login": "fferrari", "description": "", "uuid": 5503961 }, "_distro": "resolute", "_jobs": [ { "job": 114199485165, "time": 160, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11668646137" }, { "job": 114199485164, "time": 272, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11668166969" }, { "job": 114199485249, "time": 266, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11668500787" }, { "job": 114197986854, "time": 518, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668160791" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "PREDA", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "affy", "role": "Depends" }, { "package": "annotate", "role": "Depends" }, { "package": "hgu133plus2.db", "role": "Suggests" }, { "package": "hgu133plus2cdf", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "0.53.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "0.52.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "tissue", "cancerdata", "kidneycancerdata", "microarraydata", "tissuemicroarraydata", "arrayexpress", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 13, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/PREDAsampledata.html" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "AffybatchRCC", "title": "AffyBatch object for clear cell renal carcinoma (RCC) sample dataset", "object": "AffybatchRCC", "file": "AffybatchRCC.RData", "class": [ "AffyBatch" ], "fields": [], "table": false, "tojson": false }, { "name": "ExpressionSetRCC", "title": "ExpressionSet object for clear cell renal carcinoma (RCC) sample dataset", "object": "ExpressionSetRCC", "file": "ExpressionSetRCC.RData", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false }, { "name": "GEanalysisResults", "title": "RCC gene expression sample dataset - PREDA analysis results", "object": "GEanalysisResults", "file": "GEanalysisResults.RData", "class": [ "PREDADataAndResults" ], "fields": [], "table": false, "tojson": false }, { "name": "SODEGIRCNanalysisResults", "title": "SODEGIR analysis results on Copy Number data", "object": "SODEGIRCNanalysisResults", "file": "SODEGIRCNanalysisResults.RData", "class": [ "PREDAResults" ], "fields": [], "table": false, "tojson": false }, { "name": "SODEGIRCNDataForPREDA", "title": "Copy Number input data for PREDA analysis", "object": "SODEGIRCNDataForPREDA", "file": "SODEGIRCNDataForPREDA.RData", "class": [ "DataForPREDA" ], "fields": [], "table": false, "tojson": false }, { "name": "SODEGIRGEanalysisResults", "title": "SODEGIR analysis results on Gene Expression data", "object": "SODEGIRGEanalysisResults", "file": "SODEGIRGEanalysisResults.RData", "class": [ "PREDADataAndResults" ], "fields": [], "table": false, "tojson": false }, { "name": "SODEGIRGEDataForPREDA", "title": "Gene Expression input data for PREDA analysis", "object": "SODEGIRGEDataForPREDA", "file": "SODEGIRGEDataForPREDA.RData", "class": [ "DataForPREDA" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "AffybatchRCC", "title": "AffyBatch object for clear cell renal carcinoma (RCC) sample dataset", "topics": [ "AffybatchRCC" ] }, { "page": "ExpressionSetRCC", "title": "ExpressionSet object for clear cell renal carcinoma (RCC) sample dataset", "topics": [ "ExpressionSetRCC" ] }, { "page": "GEanalysisResults", "title": "RCC gene expression sample dataset - PREDA analysis results", "topics": [ "GEanalysisResults" ] }, { "page": "SODEGIRCNanalysisResults", "title": "SODEGIR analysis results on Copy Number data", "topics": [ "SODEGIRCNanalysisResults" ] }, { "page": "SODEGIRCNDataForPREDA", "title": "Copy Number input data for PREDA analysis", "topics": [ "SODEGIRCNDataForPREDA" ] }, { "page": "SODEGIRGEanalysisResults", "title": "SODEGIR analysis results on Gene Expression data", "topics": [ "SODEGIRGEanalysisResults" ] }, { "page": "SODEGIRGEDataForPREDA", "title": "Gene Expression input data for PREDA analysis", "topics": [ "SODEGIRGEDataForPREDA" ] } ], "_rundeps": [ "affy", "affyio", "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocGenerics", "BiocManager", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "generics", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lattice", "lifecycle", "lokern", "MASS", "Matrix", "memoise", "mime", "multtest", "openssl", "pkgconfig", "png", "PREDA", "preprocessCore", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sfsmisc", "survival", "sys", "vctrs", "XML", "xtable", "XVector" ], "_score": 2.414973347970818, "_indexed": false, "_nocasepkg": "predasampledata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/PREDAsampledata", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.52.0", "date": "2026-10-10T11:11:51.000Z", "distro": "resolute", "commit": "e7d552797ef02e33a841c0750d0b46cf245dcbcb", "fileid": "https://r2.ropensci.org/4f4d96fbaf0ff567f325a5f05a5001bc2bf86f05f78a35c153465d06678ad2a5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046823770" }, { "r": "4.6.1", "os": "linux", "version": "0.52.0", "date": "2026-10-10T11:11:46.000Z", "distro": "resolute", "commit": "e7d552797ef02e33a841c0750d0b46cf245dcbcb", "fileid": "https://r2.ropensci.org/a34c79429b9249ae1b9e0296e988510ffb9c4b7fdca4637ffb7b5395faf46f16", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046823770" } ] }