{
  "_id": "6a1e97ec1d7bb097a0a6d51a",
  "Package": "PathNet",
  "Type": "Package",
  "Title": "An R package for pathway analysis using topological information",
  "Version": "1.52.0",
  "Author": "Bhaskar Dutta <bhaskar.dutta@gmail.com>, Anders Wallqvist\n<awallqvist@bhsai.org>, and Jaques Reifman <jreifman@bhsai.org>",
  "Maintainer": "Ludwig Geistlinger <ludwig.geistlinger@gmail.com>",
  "Description": "PathNet uses topological information present in pathways\nand differential expression levels of genes (obtained from\nmicroarray experiment) to identify pathways that are 1)\nsignificantly enriched and 2) associated with each other in the\ncontext of differential expression. The algorithm is described\nin: PathNet: A tool for pathway analysis using topological\ninformation. Dutta B, Wallqvist A, and Reifman J. Source Code\nfor Biology and Medicine 2012 Sep 24;7(1):10.",
  "License": "GPL-3",
  "biocViews": "Pathways, DifferentialExpression, MultipleComparison, KEGG,\nNetworkEnrichment, Network",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:51:29 UTC",
  "RemoteUrl": "https://github.com/bioc/PathNet",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 08:39:44 UTC",
    "User": "root"
  },
  "MD5sum": "8d1cccec72dee09b3fcf8489060dd144",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "PathNet_1.52.0.tar.gz",
  "_fileid": "05a1fd5fe46e7c0396454eac6782ce167236f8144a1a7840ce4cb2ea88c9d32e",
  "_filesize": 824089,
  "_sha256": "05a1fd5fe46e7c0396454eac6782ce167236f8144a1a7840ce4cb2ea88c9d32e",
  "_created": "2026-06-02T08:39:44.000Z",
  "_published": "2026-06-02T08:44:28.949Z",
  "_jobs": [
    {
      "job": 79032203515,
      "time": 140,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7352977987"
    },
    {
      "job": 79032203583,
      "time": 185,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7352993521"
    },
    {
      "job": 79032203539,
      "time": 125,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7352973055"
    },
    {
      "job": 79032203502,
      "time": 140,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7353002381"
    },
    {
      "job": 79032203545,
      "time": 136,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7353015141"
    },
    {
      "job": 79031679122,
      "time": 187,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7352929149"
    },
    {
      "job": 79032203633,
      "time": 96,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7352963618"
    },
    {
      "job": 79032203550,
      "time": 91,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7352961304"
    },
    {
      "job": 79032203589,
      "time": 81,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7352957902"
    },
    {
      "job": 79032203619,
      "time": 91,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7352961211"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 14
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/PathNet",
  "_commit": {
    "id": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380689
  },
  "_maintainer": {
    "name": "Ludwig Geistlinger",
    "email": "ludwig.geistlinger@gmail.com",
    "login": "lgeistlinger",
    "description": "",
    "uuid": 11871050
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "PathNetData",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.53.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.52.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "pathways",
    "differentialexpression",
    "multiplecomparison",
    "kegg",
    "networkenrichment",
    "network"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 398,
    "source": "https://www.bioconductor.org/packages/stats/bioc/PathNet"
  },
  "_mentions": 13,
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/PathNet.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "PathNet"
  ],
  "_help": [
    {
      "page": "PathNet",
      "title": "Enrichment and contextual analysis of KEGG pathways",
      "topics": [
        "PathNet"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "PathNet.Rnw",
      "filename": "PathNet.pdf",
      "title": "PathNet",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-01-15 01:25:22",
      "modified": "2018-09-06 23:12:44",
      "commits": 3
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": false,
  "_nocasepkg": "pathnet",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/PathNet",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.52.0",
      "date": "2026-06-02T08:42:35.000Z",
      "distro": "noble",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "e6de8c9f2bd2b534e5b4caa495710b0395f730fa030084aa27b8aea8e2d37437",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.52.0",
      "date": "2026-06-02T08:41:38.000Z",
      "distro": "noble",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "6c4f7bd005ab149798692633225f16b2324dfa44a5291e746a7b66afaff85afc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.52.0",
      "date": "2026-06-02T08:42:55.000Z",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "508af3d6afbba6d887a95b7286301a0369c66b33fb2a0812509d496ba4e96d64",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.52.0",
      "date": "2026-06-02T08:43:31.000Z",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "b26ce790374de46e945a4db9aa04fb80bb1c8cba98dc39fcab097265a49183de",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.52.0",
      "date": "2026-06-02T08:41:34.000Z",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "23b2594c8f4e1a2c539e7771de2445fe6565aaab9e6835cc0d95177867c5dfd1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.52.0",
      "date": "2026-06-02T08:40:57.000Z",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "0222f779729d14a203cf2bf9d347702fad163aab2e334df985733a4fd15803e7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.52.0",
      "date": "2026-06-02T08:40:47.000Z",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "00f9d78e64e1b1d9ac53bb2b54c3143fd701d253c795c537aa56b78904e6d7cf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.52.0",
      "date": "2026-06-02T08:40:53.000Z",
      "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a",
      "fileid": "a9972d9aa65684ba2e796ae9d16232646ff10329d69d58b8c802914d3187de9d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26808368162"
    }
  ]
}