{ "_id": "6af1881aef600c02c406a262", "Package": "PathNet", "Type": "Package", "Title": "An R package for pathway analysis using topological information", "Version": "1.52.0", "Author": "Bhaskar Dutta , Anders Wallqvist\n, and Jaques Reifman ", "Maintainer": "Ludwig Geistlinger ", "Description": "PathNet uses topological information present in pathways\nand differential expression levels of genes (obtained from\nmicroarray experiment) to identify pathways that are 1)\nsignificantly enriched and 2) associated with each other in the\ncontext of differential expression. The algorithm is described\nin: PathNet: A tool for pathway analysis using topological\ninformation. Dutta B, Wallqvist A, and Reifman J. Source Code\nfor Biology and Medicine 2012 Sep 24;7(1):10.", "License": "GPL-3", "biocViews": "Pathways, DifferentialExpression, MultipleComparison, KEGG,\nNetworkEnrichment, Network", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:51:29 UTC", "RemoteUrl": "https://github.com/bioc/PathNet", "RemoteRef": "RELEASE_3_23", "RemoteSha": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-09 08:33:22 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "PathNet_1.52.0.tar.gz", "_fileid": "https://r2.ropensci.org/8270052528c1a33e6e4ca35b596034a5d47806ce48312406a37b5e4d65b297e6", "_filesize": 823412, "_sha256": "8270052528c1a33e6e4ca35b596034a5d47806ce48312406a37b5e4d65b297e6", "_expires": "2027-02-17T08:45:12.000Z", "_created": "2026-11-09T08:33:22.000Z", "_published": "2026-11-09T08:45:14.828Z", "_upstream": "https://github.com/bioc/PathNet", "_status": "success", "_maintainer": { "name": "Ludwig Geistlinger", "email": "ludwig.geistlinger@gmail.com", "login": "lgeistlinger", "description": "", "uuid": 11871050 }, "_jobs": [ { "job": 129058555900, "time": 124, "config": "bioc-checks", "r": "4.6.2", "check": "ERROR", "artifact": "13659975849" }, { "job": 129058556014, "time": 154, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13659153317" }, { "job": 129058555828, "time": 205, "config": "linux-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13659567581" }, { "job": 129058555797, "time": 115, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13660340555" }, { "job": 129058555859, "time": 113, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13659797731" }, { "job": 129057362222, "time": 179, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13658803253" }, { "job": 129058555944, "time": 70, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13658883162" }, { "job": 129058555982, "time": 87, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13659970359" }, { "job": 129058556017, "time": 90, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13658784832" }, { "job": 129058555893, "time": 78, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13659352888" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 14 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418", "_commit": { "id": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380689 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "PathNetData", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "BiocGenerics", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.53.0", "bioc": "3.24", "repository": "bioc", "r": "4.6.0" }, { "branch": "release", "version": "1.52.0", "bioc": "3.23", "repository": "bioc", "r": "4.6.0" } ], "_topics": [ "pathways", "differentialexpression", "multiplecomparison", "kegg", "networkenrichment", "network" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 485, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 513, "source": "https://www.bioconductor.org/packages/stats/bioc/PathNet" }, "_mentions": 13, "_searchresults": 5, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/PathNet.html" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "PathNet" ], "_help": [ { "page": "PathNet", "title": "Enrichment and contextual analysis of KEGG pathways", "topics": [ "PathNet" ] } ], "_rundeps": [], "_vignettes": [ { "source": "PathNet.Rnw", "filename": "PathNet.pdf", "title": "PathNet", "engine": "utils::Sweave", "headings": [], "created": "2013-01-15 01:25:22", "modified": "2018-09-06 23:12:44", "commits": 3 } ], "_score": 4, "_indexed": false, "_nocasepkg": "pathnet", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/PathNet", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.52.0", "date": "2026-11-09T08:35:45.000Z", "distro": "resolute", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/7d93f21cbaf67d5d881ae4e371c1121c655ba7e9833ccbedb6fc28856fabc7d1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" }, { "r": "4.6.2", "os": "linux", "version": "1.52.0", "date": "2026-11-09T08:36:40.000Z", "distro": "resolute", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/3690ec938f973c7499b21623f129545672141192b7fb02884903659e6618028f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" }, { "r": "4.5.3", "os": "mac", "version": "1.52.0", "date": "2026-11-09T08:42:19.000Z", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/80c5d391c339df4ad2e2f5e41aef0c94534831afed50115a753b8aff90ec994b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" }, { "r": "4.6.2", "os": "mac", "version": "1.52.0", "date": "2026-11-09T08:44:30.000Z", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/2f00e48bf78c211bd7fdda689a9d8bcf66bcd0838237ae47380c34724c64b5bc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" }, { "r": "4.6.0", "os": "wasm", "version": "1.52.0", "date": "2026-11-09T08:34:47.000Z", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/cb9fce71b245ab5f85bdaf425e0d5b3ce821bdf83a4c20fa6b4cfed3e203d823", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" }, { "r": "4.7.0", "os": "win", "version": "1.52.0", "date": "2026-11-09T08:34:31.000Z", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/642d722583ce36cb19732a2dbce3c96449ed3db57194d13267ba7c6cc5a52c1e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" }, { "r": "4.5.3", "os": "win", "version": "1.52.0", "date": "2026-11-09T08:34:34.000Z", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/f2ad85a9ef87668a46bef4abccdf67da27384795c92b9bf10be91b978bfc9841", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" }, { "r": "4.6.2", "os": "win", "version": "1.52.0", "date": "2026-11-09T08:34:24.000Z", "commit": "5d260cf0e0f8d579c46d48102a2940fb495d411a", "fileid": "https://r2.ropensci.org/e697d9165c1b8c6bf7df7a157deada3679de89290700275c499047e0b127fd5e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/42586426418" } ] }