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  "Title": "Generic infrastructure for Bioconductor mass spectrometry\npackages",
  "Description": "S4 generic functions and classes needed by Bioconductor\nproteomics packages.",
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  "Author": "Laurent Gatto <laurent.gatto@uclouvain.be>, Johannes Rainer\n<johannes.rainer@eurac.edu>",
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    "collisionEnergy",
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    "combineFeatures",
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    "dataOrigin",
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    "dataStorage<-",
    "detectorType",
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    "executeProcessingStep",
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    "filterAcquisitionNum",
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    "filterDataStorage",
    "filterEmptySpectra",
    "filterFeatures",
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    "filterMzValues",
    "filterNA",
    "filterPolarity",
    "filterPrecursorCharge",
    "filterPrecursorMz",
    "filterPrecursorMzRange",
    "filterPrecursorMzValues",
    "filterPrecursorScan",
    "filterProductMz",
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    "filterProductMzValues",
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    "filterRt",
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    "impute",
    "instrumentCustomisations",
    "instrumentManufacturer",
    "instrumentModel",
    "intensity",
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    "ions",
    "ionSource",
    "ionSourceDetails",
    "isCentroided",
    "isolationWindowLowerMz",
    "isolationWindowLowerMz<-",
    "isolationWindowTargetMz",
    "isolationWindowTargetMz<-",
    "isolationWindowUpperMz",
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    "precursorIntensity",
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    "processingData",
    "processingData<-",
    "ProcessingStep",
    "productMz",
    "productMz<-",
    "proteins",
    "psms",
    "quantify",
    "rtime",
    "rtime<-",
    "scanIndex",
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    "setBackend",
    "smooth",
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    "smoothed<-",
    "spectra",
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        "backendInitialize",
        "backendMerge",
        "backendParallelFactor",
        "isReadOnly",
        "setBackend",
        "supportsSetBackend"
      ]
    },
    {
      "page": "extractByIndex",
      "title": "Extracting elements by index",
      "topics": [
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      ]
    },
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      "page": "filterFeatures",
      "title": "Filter features",
      "topics": [
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      ]
    },
    {
      "page": "filterSpectra",
      "title": "Filter Spectra",
      "topics": [
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    },
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        "Param",
        "Param-class",
        "show,Param-method"
      ]
    },
    {
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      "title": "Get or set MS peak data",
      "topics": [
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        "peaksData<-",
        "peaksVariables"
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    },
    {
      "page": "processingQueue",
      "title": "Processing Queue",
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        "applyProcessing",
        "processingChunkFactor",
        "processingChunkSize",
        "processingChunkSize<-",
        "processingQueue"
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    },
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        "executeProcessingStep",
        "ProcessingStep",
        "ProcessingStep-class",
        "show,ProcessingStep-method"
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    },
    {
      "page": "protgenerics",
      "title": "S4 generic functions for Bioconductor proteomics infrastructure",
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        "adjacencyMatrix",
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