{
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  "Type": "Package",
  "Title": "An R Package for Qualitative Biclustering in Support of Gene\nCo-Expression Analyses",
  "Description": "The core function of this R package is to provide the\nimplementation of the well-cited and well-reviewed QUBIC\nalgorithm, aiming to deliver an effective and efficient\nbiclustering capability. This package also includes the\nfollowing related functions: (i) a qualitative representation\nof the input gene expression data, through a well-designed\ndiscretization way considering the underlying data property,\nwhich can be directly used in other biclustering programs; (ii)\nvisualization of identified biclusters using heatmap in support\nof overall expression pattern analysis; (iii) bicluster-based\nco-expression network elucidation and visualization, where\ndifferent correlation coefficient scores between a pair of\ngenes are provided; and (iv) a generalize output format of\nbiclusters and corresponding network can be freely downloaded\nso that a user can easily do following comprehensive functional\nenrichment analysis (e.g. DAVID) and advanced network\nvisualization (e.g. Cytoscape).",
  "Authors@R": "c(person(\"Yu\", \"Zhang\", role = c(\"aut\", \"cre\"), email = \"zy26@jlu.edu.cn\"),\nperson(\"Qin\", \"Ma\", role = \"aut\", email = \"qin.ma@sdstate.edu\"))",
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  "biocViews": "StatisticalMethod, Microarray, DifferentialExpression,\nMultipleComparison, Clustering, Visualization, GeneExpression,\nNetwork",
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  "License": "CC BY-NC-ND 4.0 + file LICENSE",
  "Encoding": "UTF-8",
  "SystemRequirements": "C++11, Rtools (>= 3.1)",
  "URL": "https://github.com/zy26/QUBIC",
  "BugReports": "https://github.com/zy26/QUBIC/issues",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:43:11 UTC",
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    "User": "root"
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  "Author": "Yu Zhang [aut, cre],\nQin Ma [aut]",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
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      "page": "BCQU-class",
      "title": "Class BCQU.",
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        "bcqu",
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        "BCQUD-class",
        "QUBIC",
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        "Help",
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        "Functions",
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        "Example of Escherichia coli data",
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      ],
      "created": "2016-03-29 19:58:23",
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