{
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  "Package": "REDseq",
  "Type": "Package",
  "Title": "Analysis of high-throughput sequencing data processed by\nrestriction enzyme digestion",
  "Version": "1.58.0",
  "Date": "2021-05-02",
  "Author": "Lihua Julie Zhu, Junhui Li and Thomas Fazzio",
  "Maintainer": "Lihua Julie Zhu <julie.zhu@umassmed.edu>",
  "biocViews": "Sequencing, SequenceMatching, Preprocessing",
  "Description": "The package includes functions to build restriction enzyme\ncut site (RECS) map, distribute mapped sequences on the map\nwith five different approaches, find enriched/depleted RECSs\nfor a sample, and identify differentially enriched/depleted\nRECSs between samples.",
  "License": "GPL (>=2)",
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  "Date/Publication": "2026-04-28 12:35:28 UTC",
  "RemoteUrl": "https://github.com/bioc/REDseq",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
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    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "compareREDseq",
    "distanceHistSeq2RE",
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      "object": "example.assignedREDseq",
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  "_help": [
    {
      "page": "REDseq-package",
      "title": "REDseq",
      "topics": [
        "REDseq-package",
        "REDseq"
      ]
    },
    {
      "page": "assignSeq2REsite",
      "title": "Assign mapped sequence tags to corresponding restriction enzyme (RE) cut sites",
      "topics": [
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      ]
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      "page": "binom.test.REDseq",
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      ]
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      "page": "buildREmap",
      "title": "Build a genome wide cut site map for a Restriction Enzyme (RE)",
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      ]
    },
    {
      "page": "compareREDseq",
      "title": "Compare two RED Sequencing Dataset",
      "topics": [
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      ]
    },
    {
      "page": "distanceHistSeq2RE",
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    },
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      "page": "plotCutDistribution",
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      "topics": [
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      ]
    },
    {
      "page": "summarizeByRE",
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      "topics": [
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    },
    {
      "page": "summarizeBySeq",
      "title": "Output count/weight summary by sequences",
      "topics": [
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