{
  "_id": "6a1ae6451d7bb097a09f0395",
  "Package": "RTCGA",
  "Title": "The Cancer Genome Atlas Data Integration",
  "Version": "1.42.0",
  "Date": "2022-10-28",
  "Authors@R": "c(\nperson(\"Marcin\", \"Kosinski\", role = c(\"aut\", \"cre\"),\nemail = \"m.p.kosinski@gmail.com\"),\nperson(\"Przemyslaw\", \"Biecek\", role = c(\"ctb\"),\nemail = \"przemyslaw.biecek@gmail.com\"),\nperson(\"Witold\", \"Chodor\", role = c(\"ctb\"),\nemail = \"witoldchodor@gmail.com\")\n)",
  "Maintainer": "Marcin Kosinski <m.p.kosinski@gmail.com>",
  "Description": "The Cancer Genome Atlas (TCGA) Data Portal provides a\nplatform for researchers to search, download, and analyze data\nsets generated by TCGA. It contains clinical information,\ngenomic characterization data, and high level sequence analysis\nof the tumor genomes. The key is to understand genomics to\nimprove cancer care. RTCGA package offers download and\nintegration of the variety and volume of TCGA data using\npatient barcode key, what enables easier data possession. This\nmay have an benefcial infuence on impact on development of\nscience and improvement of patients' treatment. Furthermore,\nRTCGA package transforms TCGA data to tidy form which is\nconvenient to use.",
  "BugReports": "https://github.com/RTCGA/RTCGA/issues",
  "URL": "https://rtcga.github.io/RTCGA",
  "License": "GPL-2",
  "LazyLoad": "yes",
  "biocViews": "ImmunoOncology, Software, DataImport, DataRepresentation,\nPreprocessing, RNASeq, Survival, DNAMethylation,\nPrincipalComponent, Visualization",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "RoxygenNote": "7.1.1",
  "PackageStatus": "Deprecated",
  "Config/pak/sysreqs": "cmake make libicu-dev libjpeg-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:41:52 UTC",
  "RemoteUrl": "https://github.com/bioc/RTCGA",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "a11abb98d39f63bd07f78bf6d6b0b9e9548c20c1",
  "Packaged": {
    "Date": "2026-05-30 09:22:25 UTC",
    "User": "root"
  },
  "Author": "Marcin Kosinski [aut, cre],\nPrzemyslaw Biecek [ctb],\nWitold Chodor [ctb]",
  "MD5sum": "db6656be2aa1ec77700377facb6c881c",
  "_user": "bioc-release",
  "_type": "src",
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  "_created": "2026-05-30T09:22:25.000Z",
  "_published": "2026-05-30T13:29:41.235Z",
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    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
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    "email": "m.p.kosinski@gmail.com",
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  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
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      "week": "2025-44",
      "n": 2
    },
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  "_topics": [
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    "software",
    "dataimport",
    "datarepresentation",
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    "survival",
    "dnamethylation",
    "principalcomponent",
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "source": "https://www.bioconductor.org/packages/stats/bioc/RTCGA"
  },
  "_mentions": 22,
  "_devurl": "https://github.com/rtcga/rtcga",
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  "_rbuild": "4.6.0",
  "_assets": [
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  "_exports": [
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    "checkTCGA",
    "convertPANCAN12",
    "convertTCGA",
    "downloadTCGA",
    "expressionsTCGA",
    "heatmapTCGA",
    "infoTCGA",
    "installTCGA",
    "kmTCGA",
    "mutationsTCGA",
    "pcaTCGA",
    "readTCGA",
    "survivalTCGA",
    "theme_RTCGA"
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    {
      "page": "RTCGA-package",
      "title": "The Caner Genome Atlas data integration",
      "concept": [
        "RTCGA"
      ],
      "topics": [
        "RTCGA-package",
        "RTCGA"
      ]
    },
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      "title": "Create Boxplots for TCGA Datasets",
      "concept": [
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      ],
      "topics": [
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      ]
    },
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      "title": "Information About Datasets from TCGA Project",
      "concept": [
        "RTCGA"
      ],
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      ]
    },
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      "title": "Convert Data from RTCGA Family to Bioconductor Classes",
      "concept": [
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      ],
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        "convertTCGA"
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      "title": "RTCGA - The Family of R Packages with Data from The Cancer Genome Atlas Study",
      "concept": [
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      ],
      "topics": [
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        "RTCGA.data"
      ]
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      "title": "Download TCGA Data",
      "concept": [
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      ],
      "topics": [
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      ]
    },
    {
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      "title": "Gather Expressions for TCGA Datasets",
      "concept": [
        "RTCGA"
      ],
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      ]
    },
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      "title": "Create Heatmaps for TCGA Datasets",
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      ]
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      "title": "Information About Cohorts from TCGA Project",
      "concept": [
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      ],
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      ]
    },
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      "title": "Install Data Packages from RTCGA Family",
      "concept": [
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      ],
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      ]
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      ]
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      ]
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