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  "Title": "Mutations datasets from The Cancer Genome Atlas Project",
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  "Author": "Marcin Kosinski <m.p.kosinski@gmail.com>",
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  "Description": "Package provides mutations datasets from The Cancer Genome\nAtlas Project for all cohorts types from\nhttp://gdac.broadinstitute.org/. Mutations data format is\nexplained here\nhttps://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification.\nThere is extra one column with patients' barcodes. Data from\n2015-11-01 snapshot.",
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  "_vignettes": [
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      "source": "downloading_mutations_datasets.Rmd",
      "filename": "downloading_mutations_datasets.html",
      "title": "Using RTCGA package to download mutations data that are included in RTCGA.mutations package",
      "author": "Marcin Kosiński",
      "engine": "knitr::rmarkdown",
      "headings": [
        "RTCGA package",
        "How to download RNAseq data to gain the same datasets as in RTCGA.rnaseq package?",
        "Available cohorts",
        "Downloading mutations files",
        "Reading downloaded mutations dataset",
        "Shortening paths and directories",
        "Removing NA files from data2 folder",
        "Paths to mutations data folder",
        "Reading mutations data using readTCGA",
        "Saving mutations data to RTCGA.mutations package"
      ],
      "created": "2015-09-14 14:34:39",
      "modified": "2015-12-07 22:28:04",
      "commits": 4
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