{
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  "Package": "RTCGA.rnaseq",
  "Title": "Rna-seq datasets from The Cancer Genome Atlas Project",
  "Version": "20151101.42.0",
  "Date": "2016-04-26",
  "Author": "Marcin Kosinski <m.p.kosinski@gmail.com>",
  "Maintainer": "Marcin Kosinski <m.p.kosinski@gmail.com>",
  "Description": "Package provides rna-seq datasets from The Cancer Genome\nAtlas Project for all cohorts types from\nhttp://gdac.broadinstitute.org/. Rna-seq data format is\nexplained here\nhttps://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data\nsource is illumina hiseq Level 3 RSEM normalized expression\ndata. Data from 2015-11-01 snapshot.",
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  "Date/Publication": "2026-04-28 12:28:33 UTC",
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        "ACC.rnaseq,BLCA.rnaseq,BRCA.rnaseq,CESC.rnaseq,CHOL.rnaseq,COAD.rnaseq,COADREAD.rnaseq,DLBC.rnaseq,ESCA.rnaseq,GBMLGG.rnaseq,",
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      "source": "downloading_rnaseq_datasets.Rmd",
      "filename": "downloading_rnaseq_datasets.html",
      "title": "Using RTCGA package to download RNAseq data that are included in RTCGA.rnaseq package",
      "author": "Marcin Kosinski",
      "engine": "knitr::rmarkdown",
      "headings": [
        "RTCGA package",
        "How to download RNAseq data to gain the same datasets as in RTCGA.rnaseq package?",
        "Available cohorts",
        "Downloading RNAseq files",
        "Reading downloaded RNAseq dataset",
        "Shortening paths and directories",
        "Removing NA files from data2 folder",
        "Paths to RNAseq data",
        "Reading RNAseq data using readTCGA",
        "Saving RNAseq data to RTCGA.rnaseq package"
      ],
      "created": "2015-09-14 14:34:39",
      "modified": "2015-12-14 19:16:13",
      "commits": 5
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