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  "Title": "Interactive visualization and manipulation of nested networks",
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  "URL": "https://doi.org/10.1186/gb-2012-13-4-r29",
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    "mergeOutEdges",
    "nestNodes",
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    "pingRedeR",
    "rederInfo",
    "RedPort",
    "relax",
    "relaxRedeR",
    "resetd",
    "resetRedeR",
    "selectEdges",
    "selectNodes",
    "startRedeR",
    "subg",
    "updateLayoutFromRedeR",
    "version"
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      "title": "Pre-processed dataset for RedeR case studies.",
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      ],
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      "table": true,
      "tojson": true
    },
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      "object": "hs.inter",
      "file": "hs.inter.RData",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": false
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      "title": "addEdges",
      "topics": [
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        "addEdges,character-method",
        "addEdges,data.frame-method"
      ]
    },
    {
      "page": "addGraph-methods",
      "title": "Adding 'igraph' objects to RedeR",
      "topics": [
        "addGraph",
        "addGraph,RedPort-method"
      ]
    },
    {
      "page": "addGraphToRedeR",
      "title": "Adding 'igraph' objects to RedeR",
      "topics": [
        "addGraphToRedeR"
      ]
    },
    {
      "page": "addLegendToRedeR",
      "title": "Adding graph legends to the RedeR app",
      "topics": [
        "addLegendToRedeR"
      ]
    },
    {
      "page": "addNodes-methods",
      "title": "addNodes",
      "topics": [
        "addNodes",
        "addNodes,character-method"
      ]
    },
    {
      "page": "calld-methods",
      "title": "Call RedeR app from R",
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        "calld",
        "calld,RedPort-method"
      ]
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    {
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      "title": "deleteEdges",
      "topics": [
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        "deleteEdges,character-method",
        "deleteEdges,data.frame-method"
      ]
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      "title": "deleteNodes",
      "topics": [
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        "deleteNodes,character-method"
      ]
    },
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        "exitd,RedPort-method"
      ]
    },
    {
      "page": "exitRedeR",
      "title": "Exit the RedeR R-to-Java interface",
      "topics": [
        "exitRedeR"
      ]
    },
    {
      "page": "getGraph-methods",
      "title": "Get graphs from RedeR",
      "topics": [
        "getGraph",
        "getGraph,RedPort-method"
      ]
    },
    {
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      "title": "Get graphs from RedeR",
      "topics": [
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      ]
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        "mergeOutEdges,numeric_Or_missing-method"
      ]
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      "title": "nestNodes",
      "topics": [
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        "nestNodes,character-method"
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      "topics": [
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        "ping,RedPort-method"
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      "topics": [
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        "RedeR-data1"
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    },
    {
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      "title": "Pre-processed dataset for RedeR case studies.",
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        "RedeR-data2"
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    {
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      "title": "RedeR Attribute Information",
      "topics": [
        "rederInfo"
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      "title": "Constructor of RedPort-class objects",
      "topics": [
        "RedPort"
      ]
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      "title": "RedPort: An S4 class for RedeR graphics",
      "topics": [
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      "topics": [
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        "relax,RedPort-method"
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      "title": "Relax",
      "topics": [
        "relaxRedeR"
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      "topics": [
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        "resetd,RedPort-method"
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