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    "index",
    "index<-",
    "indexBam",
    "indexBcf",
    "indexFa",
    "indexTabix",
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    "isOpen",
    "mergeBam",
    "obeyQname",
    "obeyQname<-",
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        "qnameSuffixStart,BamFileList-method",
        "qnameSuffixStart<-",
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      "page": "scanBam",
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        "asBam,character-method",
        "asSam",
        "asSam,character-method",
        "countBam",
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        "filterBam",
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        "idxstatsBam",
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        "indexBam",
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        "scanBam",
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        "sortBam,character-method"
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        "bamIndicies",
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        "BamViews,GRanges-method",
        "BamViews,missing-method",
        "BamViews-class",
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        "dim,BamViews-method",
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        "dimnames<-,BamViews,ANY-method",
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        "names,BamViews-method",
        "names<-,BamViews-method",
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        "BcfFileList-class",
        "bcfMode",
        "close.BcfFile",
        "indexBcf,BcfFile-method",
        "isOpen,BcfFile-method",
        "open.BcfFile",
        "scanBcf,BcfFile-method",
        "scanBcfHeader,BcfFile-method"
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      "page": "scanBcf",
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        "asBcf",
        "asBcf,character-method",
        "indexBcf",
        "indexBcf,character-method",
        "scanBcf",
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      "title": "File compression for tabix (bgzip) and fasta (razip) files. IMPORTANT NOTE: Starting with Rsamtools 1.99.0 (Bioconductor 3.9), 'razip()' is defunct. Please use 'bgzip()' instead.",
      "topics": [
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      "page": "deprecated",
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        "scanBam,BamSampler-method",
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      "page": "FaFile-class",
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      "page": "indexTabix",
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