{ "_id": "6a1d27711d7bb097a0a38215", "Package": "SUITOR", "Title": "Selecting the number of mutational signatures through\ncross-validation", "Version": "1.14.0", "Date": "2022-05-10", "Authors@R": "c(person(given=\"DongHyuk\", family=\"Lee\", role=\"aut\", email=\"dhyuklee@pusan.ac.kr\"),\nperson(given=\"Bin\", family=\"Zhu\", role=\"aut\", email=\"bin.zhu@nih.gov\"),\nperson(given=\"Bill\", family=\"Wheeler\", role=\"cre\", email=\"wheelerb@imsweb.com\"))", "Description": "An unsupervised cross-validation method to select the\noptimal number of mutational signatures. A data set of\nmutational counts is split into training and validation\ndata.Signatures are estimated in the training data and then\nused to predict the mutations in the validation data.", "License": "GPL-2", "biocViews": "Genetics, Software, SomaticMutation", "NeedsCompilation": "yes", "BugReports": "https://github.com/wheelerb/SUITOR/issues", "VignetteBuilder": "knitr", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:58:28 UTC", "RemoteUrl": "https://github.com/bioc/SUITOR", "RemoteRef": "RELEASE_3_23", "RemoteSha": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "Packaged": { "Date": "2026-05-30 09:14:50 UTC", "User": "root" }, "Author": "DongHyuk Lee [aut],\nBin Zhu [aut],\nBill Wheeler [cre]", "Maintainer": "Bill Wheeler ", "MD5sum": "10317af3cc25ed7a2b4dc40aacc7d77a", "_user": "bioc-release", "_type": "src", "_file": "SUITOR_1.14.0.tar.gz", "_fileid": "a1b5972a6eec6a198cb9f94e02b39d1625566e94cd488203c9eec80116efea4a", "_filesize": 334710, "_sha256": "a1b5972a6eec6a198cb9f94e02b39d1625566e94cd488203c9eec80116efea4a", "_created": "2026-05-30T09:14:50.000Z", "_published": "2026-06-01T06:32:17.485Z", "_jobs": [ { "job": 78798345614, "time": 209, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7307155749" }, { "job": 78798345800, "time": 206, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7307122278" }, { "job": 78798345498, "time": 199, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7307154796" }, { "job": 78798345560, "time": 202, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7307121935" }, { "job": 78798345655, "time": 224, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7307157099" }, { "job": 78798345361, "time": 87, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 78798345584, "time": 231, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7307133719" }, { "job": 78798345639, "time": 126, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7308338298" }, { "job": 78798345530, "time": 328, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7307143401" }, { "job": 78798345308, "time": 208, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7307101891" }, { "job": 78798345525, "time": 174, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7307152428" }, { "job": 78798345537, "time": 220, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7307157494" }, { "job": 78798345865, "time": 112, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7307147710" }, { "job": 78798345585, "time": 127, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7307148868" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 8 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/SUITOR", "_commit": { "id": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777381108 }, "_maintainer": { "name": "Bill Wheeler", "email": "wheelerb@imsweb.com", "login": "wheelerb", "description": "", "uuid": 33498685 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "devtools", "role": "Suggests" }, { "package": "MutationalPatterns", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "BiocManager", "role": "Suggests" }, { "package": "BiocGenerics", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.15.0", "bioc": "3.24" }, { "branch": "release", "version": "1.14.0", "bioc": "3.23" } ], "_topics": [ "genetics", "software", "somaticmutation" ], "_stars": 0, "_contributors": [ { "user": "wheelerb", "count": 104, "uuid": 33498685 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 293, "source": "https://www.bioconductor.org/packages/stats/bioc/SUITOR" }, "_devurl": "https://github.com/wheelerb/suitor", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SUITOR.html", "manual.pdf" ], "_homeurl": "https://github.com/wheelerb/suitor", "_realowner": "bioc", "_cranurl": false, "_exports": [ "getSummary", "plotErrors", "suitor", "suitorExtractWH" ], "_datasets": [ { "name": "plotData", "title": "Example data for plotting", "object": "plotData", "file": "plotData.rda", "class": [ "data.frame" ], "fields": [ "Rank", "Type", "MSErr" ], "rows": 30, "table": true, "tojson": true }, { "name": "results", "title": "suitor return object", "object": "results", "file": "results.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "SimData", "title": "Data for examples", "object": "SimData", "file": "SimData.rda", "class": [ "matrix", "array" ], "fields": [ "X1", "X2", "X3", "X4", "X5", "X6", "X7", "X8", "X9", "X10", "X11", "X12", "X13", "X14", "X15", "X16", "X17", "X18", "X19", "X20", "X21", "X22", "X23", "X24", "X25", "X26", "X27", "X28", "X29", "X30", "X31", "X32", "X33", "X34", "X35", "X36", "X37", "X38", "X39", "X40", "X41", "X42", "X43", "X44", "X45", "X46", "X47", "X48", "X49", "X50", "X51", "X52", "X53", "X54", "X55", "X56", "X57", "X58", "X59", "X60", "X61", "X62", "X63", "X64", "X65", "X66", "X67", "X68", "X69", "X70", "X71", "X72", "X73", "X74", "X75", "X76", "X77", "X78", "X79", "X80", "X81", "X82", "X83", "X84", "X85", "X86", "X87", "X88", "X89", "X90", "X91", "X92", "X93", "X94", "X95", "X96", "X97", "X98", "X99", "X100", "X101", "X102", "X103", "X104", "X105", "X106", "X107", "X108", "X109", "X110", "X111", "X112", "X113", "X114", "X115", "X116", "X117", "X118", "X119", "X120", "X121", "X122", "X123", "X124", "X125", "X126", "X127", "X128", "X129", "X130", "X131", "X132", "X133", "X134", "X135", "X136", "X137", "X138", "X139", "X140", "X141", "X142", "X143", "X144", "X145", "X146", "X147", "X148", "X149", "X150", "X151", "X152", "X153", "X154", "X155", "X156", "X157", "X158", "X159", "X160", "X161", "X162", "X163", "X164", "X165", "X166", "X167", "X168", "X169", "X170", "X171", "X172", "X173", "X174", "X175", "X176", "X177", "X178", "X179", "X180", "X181", "X182", "X183", "X184", "X185", "X186", "X187", "X188", "X189", "X190", "X191", "X192", "X193", "X194", "X195", "X196", "X197", "X198", "X199", "X200", "X201", "X202", "X203", "X204", "X205", "X206", "X207", "X208", "X209", "X210", "X211", "X212", "X213", "X214", "X215", "X216", "X217", "X218", "X219", "X220", "X221", "X222", "X223", "X224", "X225", "X226", "X227", "X228", "X229", "X230", "X231", "X232", "X233", "X234", "X235", "X236", "X237", "X238", "X239", "X240", "X241", "X242", "X243", "X244", "X245", "X246", "X247", "X248", "X249", "X250", "X251", "X252", "X253", "X254", "X255", "X256", "X257", "X258", "X259", "X260", "X261", "X262", "X263", "X264", "X265", "X266", "X267", "X268", "X269", "X270", "X271", "X272", "X273", "X274", "X275", "X276", "X277", "X278", "X279", "X280", "X281", "X282", "X283", "X284", "X285", "X286", "X287", "X288", "X289", "X290", "X291", "X292", "X293", "X294", "X295", "X296", "X297", "X298", "X299", "X300" ], "rows": 96, "table": true, "tojson": true } ], "_help": [ { "page": "SUITOR-package", "title": "Number of mutational signatures", "topics": [ "SUITOR" ] }, { "page": "getSummary", "title": "Compute summary results", "topics": [ "getSummary" ] }, { "page": "plotData", "title": "Example data for plotting", "topics": [ "plotData" ] }, { "page": "plotErrors", "title": "Plot train and test errors", "topics": [ "plotErrors" ] }, { "page": "results", "title": "suitor return object", "topics": [ "results" ] }, { "page": "SimData", "title": "Data for examples", "topics": [ "SimData" ] }, { "page": "suitor", "title": "suitor", "topics": [ "suitor" ] }, { "page": "suitorExtractWH", "title": "suitorExtractWH", "topics": [ "suitorExtractWH" ] } ], "_readme": "https://github.com/bioc/SUITOR/raw/RELEASE_3_23/README.md", "_rundeps": [ "BH", "BiocParallel", "cli", "codetools", "cpp11", "farver", "formatR", "futile.logger", "futile.options", "ggplot2", "glue", "gtable", "isoband", "labeling", "lambda.r", "lifecycle", "R6", "RColorBrewer", "rlang", "S7", "scales", "snow", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "vignette.Rmd", "filename": "vignette.html", "title": "SUITOR: selecting the number of mutational signatures", "author": "DongHyuk Lee and Bin Zhu", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installing the SUITOR package from Bioconductor", "Loading the package", "Example data", "Selecting the number of mutational signatures", "Input data", "Options", "Running suitor()", "Extracting the signature profiles and activities", "Summarizing signature profiles with MutationalPatterns", "Session Information" ], "created": "2022-04-18 15:48:38", "modified": "2022-05-10 20:19:44", "commits": 4 } ], "_score": 4, "_indexed": false, "_nocasepkg": "suitor", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/SUITOR", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.14.0", "date": "2026-05-30T09:18:02.000Z", "distro": "noble", "arch": "aarch64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "fff2081b21ffe311dd61a9f80731abfc515affac85ec6f0a5bcf64eaf426b525", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.7.0", "os": "linux", "version": "1.14.0", "date": "2026-05-30T09:23:48.000Z", "distro": "noble", "arch": "x86_64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "1d06c686f1e41c1d3b60391e638987bfb60ebcd95d9666ae65bb7d6481e3f506", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.6.0", "os": "linux", "version": "1.14.0", "date": "2026-05-30T09:18:00.000Z", "distro": "noble", "arch": "aarch64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "04ad4b8f1ee8cd485186c527e3a4bdcb52cbb950bf89595c6ab707d46e77f557", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.6.0", "os": "linux", "version": "1.14.0", "date": "2026-05-30T09:24:15.000Z", "distro": "noble", "arch": "x86_64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "ed1a3124c49657e2ae3e692d979119a3f3ea5496956db6e2ce00457cad5eb0b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.5.3", "os": "mac", "version": "1.14.0", "date": "2026-05-30T09:19:35.000Z", "arch": "x86_64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "4b53cf1591caaff47b4866ebdbb4f5a2ffb96afd034cfca51cfd54e59a184f0b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.6.0", "os": "mac", "version": "1.14.0", "date": "2026-05-30T12:55:38.000Z", "arch": "aarch64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "2b95cf0c6d6468827aaf76d15fc8657308ff76bf53100dee20d2b3facbab4967", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.6.0", "os": "mac", "version": "1.14.0", "date": "2026-05-30T09:20:56.000Z", "arch": "x86_64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "7aea4e1743e5965eb3592f38496b71fcd90441e1ca3c32704600c8bc7a00699a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.6.0", "os": "wasm", "version": "1.14.0", "date": "2026-05-30T09:23:59.000Z", "arch": "emscripten", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "c8cef23c18ce9e3f04fadff92eab46d8afab18229480f2a9ab1e2ac54db117e4", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.7.0", "os": "win", "version": "1.14.0", "date": "2026-05-30T09:23:54.000Z", "arch": "x86_64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "8e694232cf9bacdcfc1738d82686694b8752e4bf7136eb222bbe1bc588a45065", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.5.3", "os": "win", "version": "1.14.0", "date": "2026-05-30T09:22:23.000Z", "arch": "x86_64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "2fad22eeaf9f1c4c2ddeddcb110e82789f4eb9f99a88f93a49d8f01340384b80", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" }, { "r": "4.6.0", "os": "win", "version": "1.14.0", "date": "2026-05-30T09:22:34.000Z", "arch": "x86_64", "commit": "ff103fd811e03847890c51c522b1f4e3387d3fc7", "fileid": "383ffeedb07c4489ff6e08c14d05dbed2061ffc51c7bcf9164d69772d331f28a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26675768190" } ] }