{ "_id": "6acf3818d9de2f3f33fc94b2", "Package": "ScaledMatrix", "Version": "1.20.0", "Date": "2024-02-29", "Title": "Creating a DelayedMatrix of Scaled and Centered Values", "Authors@R": "person(\"Aaron\", \"Lun\", role=c(\"aut\", \"cre\", \"cph\"),\nemail=\"infinite.monkeys.with.keyboards@gmail.com\")", "biocViews": "Software, DataRepresentation", "Description": "Provides delayed computation of a matrix of scaled and\ncentered values. The result is equivalent to using the scale()\nfunction but avoids explicit realization of a dense matrix\nduring block processing. This permits greater efficiency in\ncommon operations, most notably matrix multiplication.", "License": "GPL-3", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.1", "BugReports": "https://github.com/LTLA/ScaledMatrix/issues", "URL": "https://github.com/LTLA/ScaledMatrix", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:54:45 UTC", "RemoteUrl": "https://github.com/bioc/ScaledMatrix", "RemoteRef": "RELEASE_3_23", "RemoteSha": "94df0ea72694e0403c34536ec15ffb459d70662f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-14 07:38:22 UTC", "User": "root" }, "Author": "Aaron Lun [aut, cre, cph]", "Maintainer": "Aaron Lun ", "_user": "bioc-release", "_type": "src", "_file": "ScaledMatrix_1.20.0.tar.gz", "_fileid": "https://r2.ropensci.org/2ebb6ec1b6f38e3ba615965be1be2d81d64f6112557190e409eed81b92284e31", "_filesize": 103425, "_sha256": "2ebb6ec1b6f38e3ba615965be1be2d81d64f6112557190e409eed81b92284e31", "_expires": "2027-01-22T08:06:47.000Z", "_created": "2026-10-14T07:38:22.000Z", "_published": "2026-10-14T08:06:48.838Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 7 }, "_upstream": "https://github.com/bioc/ScaledMatrix", "_commit": { "id": "94df0ea72694e0403c34536ec15ffb459d70662f", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380885 }, "_maintainer": { "name": "Aaron Lun", "email": "infinite.monkeys.with.keyboards@gmail.com", "login": "ltla", "twitter": "@realAaronLun", "description": "(ノಠ益ಠ)ノ彡┻━┻\n", "uuid": 8166669 }, "_distro": "resolute", "_jobs": [ { "job": 115738316737, "time": 150, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11877501272" }, { "job": 115738316763, "time": 279, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11877790858" }, { "job": 115738316741, "time": 276, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11877940627" }, { "job": 115738317502, "time": 155, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11879015122" }, { "job": 115738316757, "time": 311, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11878850320" }, { "job": 115736426580, "time": 314, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11877850059" }, { "job": 115738316803, "time": 118, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11877565844" }, { "job": 115738316919, "time": 189, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11877625930" }, { "job": 115738316821, "time": 219, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11877174119" }, { "job": 115738316810, "time": 193, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11877168995" } ], "_registered": true, "_dependencies": [ { "package": "methods", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "DelayedArray", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocSingular", "role": "Suggests" }, { "package": "DelayedMatrixStats", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 126, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.21.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.20.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "software", "datarepresentation" ], "_stars": 0, "_contributors": [ { "user": "jwokaty", "count": 10, "uuid": 1744257 }, { "user": "ltla", "count": 8, "uuid": 8166669 }, { "user": "nturaga", "count": 6, "uuid": 2746443 }, { "user": "hpages", "count": 1, "uuid": 8810451 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 477, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 29747, "source": "https://www.bioconductor.org/packages/stats/bioc/ScaledMatrix" }, "_devurl": "https://github.com/ltla/scaledmatrix", "_searchresults": 10, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/ScaledMatrix.html" ], "_homeurl": "https://github.com/ltla/scaledmatrix", "_realowner": "bioc", "_cranurl": false, "_exports": [ "colMeans", "colSums", "DelayedArray", "extract_array", "rowMeans", "rowSums", "ScaledMatrix", "ScaledMatrixSeed", "show", "t" ], "_help": [ { "page": "ScaledMatrix", "title": "The ScaledMatrix class", "topics": [ "%*%,ANY,ScaledMatrix-method", "%*%,ScaledMatrix,ANY-method", "%*%,ScaledMatrix,ScaledMatrix-method", "colMeans,ScaledMatrix-method", "colSums,ScaledMatrix-method", "crossprod,ANY,ScaledMatrix-method", "crossprod,ScaledMatrix,ANY-method", "crossprod,ScaledMatrix,missing-method", "crossprod,ScaledMatrix,ScaledMatrix-method", "DelayedArray,ScaledMatrixSeed-method", "dim,ScaledMatrixSeed-method", "dimnames,ScaledMatrixSeed-method", "dimnames<-,ScaledMatrix,ANY-method", "extract_array,ScaledMatrixSeed-method", "rowMeans,ScaledMatrix-method", "rowSums,ScaledMatrix-method", "ScaledMatrix", "ScaledMatrix-class", "ScaledMatrixSeed", "ScaledMatrixSeed-class", "show,ScaledMatrixSeed-method", "t,ScaledMatrix-method", "tcrossprod,ANY,ScaledMatrix-method", "tcrossprod,ScaledMatrix,ANY-method", "tcrossprod,ScaledMatrix,missing-method", "tcrossprod,ScaledMatrix,ScaledMatrix-method", "[,ScaledMatrix,ANY,ANY,ANY-method" ] } ], "_readme": "https://github.com/bioc/ScaledMatrix/raw/RELEASE_3_23/README.md", "_rundeps": [ "abind", "BiocGenerics", "DelayedArray", "generics", "IRanges", "lattice", "Matrix", "MatrixGenerics", "matrixStats", "S4Arrays", "S4Vectors", "SparseArray", "XVector" ], "_vignettes": [ { "source": "ScaledMatrix.Rmd", "filename": "ScaledMatrix.html", "title": "Using the ScaledMatrix class", "author": "Aaron Lun", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Matrix multiplication", "Other utilities", "Caveats", "Session information" ], "created": "2020-12-13 01:13:39", "modified": "2023-05-03 16:17:37", "commits": 4 } ], "_score": 8.528056228011652, "_indexed": false, "_nocasepkg": "scaledmatrix", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/ScaledMatrix", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.20.0", "date": "2026-10-14T07:41:34.000Z", "distro": "resolute", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/3d7269cf9d42a286ab97a3803a274205089ba2ae880a38fc8e2ac5fadd251251", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" }, { "r": "4.6.1", "os": "linux", "version": "1.20.0", "date": "2026-10-14T07:41:34.000Z", "distro": "resolute", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/78b2240b5d8e39f76e323ac87537460fefd06d4934c991c7c7e4d5f9a105ba7b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" }, { "r": "4.5.3", "os": "mac", "version": "1.20.0", "date": "2026-10-14T08:05:16.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/375c4e02bbfd9172236250d143dd7cd00be4bb420585a7e3cbb1c779c76a1363", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" }, { "r": "4.6.1", "os": "mac", "version": "1.20.0", "date": "2026-10-14T08:02:33.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/0d9d30c72961d014b41f3ceeebfafe170fcd269b7259dfab772b98b41bdced4f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" }, { "r": "4.6.0", "os": "wasm", "version": "1.20.0", "date": "2026-10-14T07:40:47.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/608e99f9ede8cd2b6f0d34a8e938aad05c5c6d06f9c97872ef651054741eb963", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" }, { "r": "4.7.0", "os": "win", "version": "1.20.0", "date": "2026-10-14T07:40:22.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/6a0268d759db69e1abae443fa82b11a11f96c574d412ae2da1963a2b20250dfb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" }, { "r": "4.5.3", "os": "win", "version": "1.20.0", "date": "2026-10-14T07:40:49.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/4ed3e5c1006d78e64ea6ddd1b6b0091f081acc57e1b1a3662302ec48908313db", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" }, { "r": "4.6.1", "os": "win", "version": "1.20.0", "date": "2026-10-14T07:39:57.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "https://r2.ropensci.org/684e9f4c13ac4e5f02e15d5b6554d27c8749a61a83207f592b4dc27a4d5611fd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38529079365" } ] }