{ "_id": "6a31027b3efcd9bda43532c5", "Package": "ScaledMatrix", "Version": "1.20.0", "Date": "2024-02-29", "Title": "Creating a DelayedMatrix of Scaled and Centered Values", "Authors@R": "person(\"Aaron\", \"Lun\", role=c(\"aut\", \"cre\", \"cph\"),\nemail=\"infinite.monkeys.with.keyboards@gmail.com\")", "biocViews": "Software, DataRepresentation", "Description": "Provides delayed computation of a matrix of scaled and\ncentered values. The result is equivalent to using the scale()\nfunction but avoids explicit realization of a dense matrix\nduring block processing. This permits greater efficiency in\ncommon operations, most notably matrix multiplication.", "License": "GPL-3", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.1", "BugReports": "https://github.com/LTLA/ScaledMatrix/issues", "URL": "https://github.com/LTLA/ScaledMatrix", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:54:45 UTC", "RemoteUrl": "https://github.com/bioc/ScaledMatrix", "RemoteRef": "RELEASE_3_23", "RemoteSha": "94df0ea72694e0403c34536ec15ffb459d70662f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-16 07:43:59 UTC", "User": "root" }, "Author": "Aaron Lun [aut, cre, cph]", "Maintainer": "Aaron Lun ", "MD5sum": "5e8cc6faa4dc23edb04729a850c484ec", "_user": "bioc-release", "_type": "src", "_file": "ScaledMatrix_1.20.0.tar.gz", "_fileid": "f3a479a0fd7146c9e26b4f8e9c62f8066d667e63afa5d9cc5bd5236aa7da2ab8", "_filesize": 104113, "_sha256": "f3a479a0fd7146c9e26b4f8e9c62f8066d667e63afa5d9cc5bd5236aa7da2ab8", "_created": "2026-06-16T07:43:59.000Z", "_published": "2026-06-16T07:59:55.216Z", "_jobs": [ { "job": 81606126188, "time": 174, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7660436976" }, { "job": 81606126171, "time": 267, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7660469586" }, { "job": 81606126191, "time": 270, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7660468425" }, { "job": 81606126177, "time": 166, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7660651209" }, { "job": 81606126181, "time": 148, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7660645611" }, { "job": 81604997531, "time": 401, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7660380475" }, { "job": 81606126178, "time": 133, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7660423103" }, { "job": 81606126186, "time": 271, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7660468589" }, { "job": 81606126179, "time": 201, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7660446948" }, { "job": 81606126176, "time": 191, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7660443567" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 7 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/ScaledMatrix", "_commit": { "id": "94df0ea72694e0403c34536ec15ffb459d70662f", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380885 }, "_maintainer": { "name": "Aaron Lun", "email": "infinite.monkeys.with.keyboards@gmail.com", "login": "ltla", "twitter": "@realAaronLun", "description": "(ノಠ益ಠ)ノ彡┻━┻\n", "uuid": 8166669 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "methods", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "DelayedArray", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocSingular", "role": "Suggests" }, { "package": "DelayedMatrixStats", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 124, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.21.0", "bioc": "3.24" }, { "branch": "release", "version": "1.20.0", "bioc": "3.23" } ], "_topics": [ "software", "datarepresentation" ], "_stars": 0, "_contributors": [ { "user": "jwokaty", "count": 10, "uuid": 1744257 }, { "user": "ltla", "count": 8, "uuid": 8166669 }, { "user": "nturaga", "count": 6, "uuid": 2746443 }, { "user": "hpages", "count": 1, "uuid": 8810451 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 440, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/ltla/scaledmatrix", "_searchresults": 10, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/ScaledMatrix.html", "manual.pdf" ], "_homeurl": "https://github.com/ltla/scaledmatrix", "_realowner": "bioc", "_cranurl": false, "_exports": [ "colMeans", "colSums", "DelayedArray", "extract_array", "rowMeans", "rowSums", "ScaledMatrix", "ScaledMatrixSeed", "show", "t" ], "_help": [ { "page": "ScaledMatrix", "title": "The ScaledMatrix class", "topics": [ "%*%,ANY,ScaledMatrix-method", "%*%,ScaledMatrix,ANY-method", "%*%,ScaledMatrix,ScaledMatrix-method", "colMeans,ScaledMatrix-method", "colSums,ScaledMatrix-method", "crossprod,ANY,ScaledMatrix-method", "crossprod,ScaledMatrix,ANY-method", "crossprod,ScaledMatrix,missing-method", "crossprod,ScaledMatrix,ScaledMatrix-method", "DelayedArray,ScaledMatrixSeed-method", "dim,ScaledMatrixSeed-method", "dimnames,ScaledMatrixSeed-method", "dimnames<-,ScaledMatrix,ANY-method", "extract_array,ScaledMatrixSeed-method", "rowMeans,ScaledMatrix-method", "rowSums,ScaledMatrix-method", "ScaledMatrix", "ScaledMatrix-class", "ScaledMatrixSeed", "ScaledMatrixSeed-class", "show,ScaledMatrixSeed-method", "t,ScaledMatrix-method", "tcrossprod,ANY,ScaledMatrix-method", "tcrossprod,ScaledMatrix,ANY-method", "tcrossprod,ScaledMatrix,missing-method", "tcrossprod,ScaledMatrix,ScaledMatrix-method", "[,ScaledMatrix,ANY,ANY,ANY-method" ] } ], "_readme": "https://github.com/bioc/ScaledMatrix/raw/RELEASE_3_23/README.md", "_rundeps": [ "abind", "BiocGenerics", "DelayedArray", "generics", "IRanges", "lattice", "Matrix", "MatrixGenerics", "matrixStats", "S4Arrays", "S4Vectors", "SparseArray", "XVector" ], "_vignettes": [ { "source": "ScaledMatrix.Rmd", "filename": "ScaledMatrix.html", "title": "Using the ScaledMatrix class", "author": "Aaron Lun", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Matrix multiplication", "Other utilities", "Caveats", "Session information" ], "created": "2020-12-13 01:13:39", "modified": "2023-05-03 16:17:37", "commits": 4 } ], "_score": 7.04766419460156, "_indexed": false, "_nocasepkg": "scaledmatrix", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/ScaledMatrix", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.20.0", "date": "2026-06-16T07:48:34.000Z", "distro": "noble", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "d9d71bb422ccd56d08233634805b23985bd4176ab54ecfc54430b1c61e6679fe", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" }, { "r": "4.6.0", "os": "linux", "version": "1.20.0", "date": "2026-06-16T07:48:52.000Z", "distro": "noble", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "25d2a0e329a2bc2ec1eabb1034110f0285d840f65554212e4b54f875d823584e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" }, { "r": "4.5.3", "os": "mac", "version": "1.20.0", "date": "2026-06-16T07:58:22.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "78405f5cffd9c3ae9488017afcb0fa9b4a2120237ad380ccc7e001fc42ab3fc8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" }, { "r": "4.6.0", "os": "mac", "version": "1.20.0", "date": "2026-06-16T07:58:04.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "c3582dc7211594c12124601314fed4139bcc0e61026a844979b6d76135de9c81", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" }, { "r": "4.6.0", "os": "wasm", "version": "1.20.0", "date": "2026-06-16T07:48:06.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "b0bfa4437776d770cf828cb0cb089dc557479e7dfed9383952eb399f7a0a2ee5", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" }, { "r": "4.7.0", "os": "win", "version": "1.20.0", "date": "2026-06-16T07:48:22.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "848dd67ef4fa5cfd42bf91b2a5ac177958e66ab315a9a8facf95bc8de2b5c1ce", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" }, { "r": "4.5.3", "os": "win", "version": "1.20.0", "date": "2026-06-16T07:47:22.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "9f38342936ac1aed211f17835cbf49b07a51e74d6f3b8547827214b1f3421fb6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" }, { "r": "4.6.0", "os": "win", "version": "1.20.0", "date": "2026-06-16T07:47:13.000Z", "commit": "94df0ea72694e0403c34536ec15ffb459d70662f", "fileid": "980b082fe175011400f912d4e6cd070c2f64fcc3a57ba3d7ce1b5e9c0a5015fd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27601984269" } ] }