{ "_id": "6a266b80794753ddbc3e7a3b", "Package": "ScreenR", "Type": "Package", "Title": "Package to Perform High Throughput Biological Screening", "Version": "1.14.0", "Date": "2022-04-01", "Authors@R": "c(person(\"Emanuel Michele\", \"Soda\", role = c(\"aut\", \"cre\"),\nemail = \"emanuelsoda@gmail.com\",\ncomment = c(ORICD = \"0000-0002-2301-6465\")),\nperson(\"Elena\", \"Ceccacci\", role = c(\"aut\"),\nemail = \"elena.ceccacci@ieo.it\",\ncomment = c(ORICD = \"0000-0002-2285-8994\")),\nperson(\"Saverio\", \"Minucci\", role = c(\"fnd\", \"ths\"),\nemail = \"saverio.minucci@ieo.it\",\ncomment = c(ORICD = \"0000-0001-5678-536X\")))", "Description": "ScreenR is a package suitable to perform hit\nidentification in loss of function High Throughput Biological\nScreenings performed using barcoded shRNA-based libraries.\nScreenR combines the computing power of software such as edgeR\nwith the simplicity of use of the Tidyverse metapackage.\nScreenR executes a pipeline able to find candidate hits from\nbarcode counts, and integrates a wide range of visualization\nmodes for each step of the analysis.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.2.0", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "biocViews": "Software, AssayDomain, GeneExpression", "BugReports": "https://github.com/EmanuelSoda/ScreenR/issues", "URL": "https://emanuelsoda.github.io/ScreenR/", "Collate": "'ScreenR-package.R' 'annotation_table.R' 'barcode_lost.R'\n'camera_method.R' 'compute_data_table.R' 'compute_metrics.R'\n'count_mapped_reads.R' 'count_table.R' 'create_object.R'\n'distribution_mapped_reads.R' 'filter_by.R' 'find_common_hit.R'\n'find_roast_hit.R' 'find_robust_zscore_hit.R'\n'find_zscore_hit.R' 'generics.R' 'mapped_reads.R'\n'normalize_data.R' 'plot_barcode_hit.R' 'plot_barcode_trend.R'\n'plot_boxplot.R' 'plot_mapped_reads.R' 'plot_mds.R'\n'plot_trend.R' 'plot_zscore_distribution.R' 'screenr-class.R'\n'zzz.R'", "Config/pak/sysreqs": "libicu-dev", 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