{
  "_id": "6abe4d5399f7aa8c6aa5514d",
  "Package": "SpectraQL",
  "Title": "MassQL support for Spectra",
  "Version": "1.6.0",
  "Description": "The Mass Spec Query Language (MassQL) is a domain-specific\nlanguage enabling to express a query and retrieve mass\nspectrometry (MS) data in a more natural and understandable way\nfor MS users. It is inspired by SQL and is by design\nprogramming language agnostic. The SpectraQL package adds\nsupport for the MassQL query language to R, in particular to MS\ndata represented by Spectra objects. Users can thus apply\nMassQL expressions to analyze and retrieve specific data from\nSpectra objects.",
  "Authors@R": "c(person(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Andrea\", family = \"Vicini\",\nemail = \"andrea.vicini@eurac.edu\",\nrole = \"aut\"),\nperson(given = \"Sebastian\", family = \"Gibb\",\nemail = \"mail@sebastiangibb.de\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7406-4443\"))\n)",
  "License": "Artistic-2.0",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/RforMassSpectrometry/SpectraQL/issues",
  "URL": "https://github.com/RforMassSpectrometry/SpectraQL",
  "biocViews": "Infrastructure, Proteomics, MassSpectrometry, Metabolomics",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown=TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 13:03:39 UTC",
  "RemoteUrl": "https://github.com/bioc/SpectraQL",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-01 11:49:52 UTC",
    "User": "root"
  },
  "Author": "Johannes Rainer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6977-7147>),\nAndrea Vicini [aut],\nSebastian Gibb [ctb] (ORCID: <https://orcid.org/0000-0001-7406-4443>)",
  "Maintainer": "Johannes Rainer <Johannes.Rainer@eurac.edu>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "SpectraQL_1.6.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/72bba6284f19d9f90aa4032f2faac22eefb35ab5adbc5d89b396934f39d96963",
  "_filesize": 326362,
  "_sha256": "72bba6284f19d9f90aa4032f2faac22eefb35ab5adbc5d89b396934f39d96963",
  "_expires": "2027-01-09T12:08:49.000Z",
  "_created": "2026-10-01T11:49:52.000Z",
  "_published": "2026-10-01T12:08:51.481Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 4
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472",
  "_status": "success",
  "_upstream": "https://github.com/bioc/SpectraQL",
  "_commit": {
    "id": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777381419
  },
  "_maintainer": {
    "name": "Johannes Rainer",
    "email": "johannes.rainer@eurac.edu",
    "login": "jorainer",
    "mastodon": "@jorainer@fediscience.org",
    "bluesky": "@jorainer.bsky.social",
    "linkedin": "in/jorainer",
    "orcid": "0000-0002-6977-7147",
    "description": "Computational Mass Spectrometry and Metabolomics, mostly; love R coding and Emacs; member of the Bioconductor Community Advisory Board.",
    "uuid": 5506112
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 110354604076,
      "time": 184,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11159856316"
    },
    {
      "job": 110354603953,
      "time": 353,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11159991733"
    },
    {
      "job": 110354603933,
      "time": 296,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11160481149"
    },
    {
      "job": 110354603771,
      "time": 151,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11161481034"
    },
    {
      "job": 110354603746,
      "time": 120,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11161705826"
    },
    {
      "job": 110352762133,
      "time": 322,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11160070498"
    },
    {
      "job": 110354603832,
      "time": 147,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11159326135"
    },
    {
      "job": 110354604136,
      "time": 163,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11159715876"
    },
    {
      "job": 110354604060,
      "time": 152,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11160215914"
    },
    {
      "job": 110354604073,
      "time": 149,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11160475703"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "ProtGenerics",
      "version": ">= 1.25.1",
      "role": "Depends"
    },
    {
      "package": "Spectra",
      "version": ">= 1.5.6",
      "role": "Imports"
    },
    {
      "package": "MsCoreUtils",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "MsDataHub",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "S4Vectors",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "mzR",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-06",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.1",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "infrastructure",
    "proteomics",
    "massspectrometry",
    "metabolomics"
  ],
  "_stars": 10,
  "_contributors": [
    {
      "user": "jorainer",
      "count": 80,
      "uuid": 5506112
    },
    {
      "user": "jwokaty",
      "count": 8,
      "uuid": 1744257
    },
    {
      "user": "andreavicini",
      "count": 5,
      "uuid": 36991461
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 471,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 255,
    "source": "https://www.bioconductor.org/packages/stats/bioc/SpectraQL"
  },
  "_devurl": "https://github.com/rformassspectrometry/spectraql",
  "_searchresults": 15,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SpectraQL.html"
  ],
  "_homeurl": "https://github.com/rformassspectrometry/spectraql",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "query"
  ],
  "_help": [
    {
      "page": "query",
      "title": "Query a Spectra object using MassQL",
      "topics": [
        "query",
        "query,Spectra-method"
      ]
    }
  ],
  "_pkglogo": "https://github.com/bioc/SpectraQL/raw/RELEASE_3_23/logo.png",
  "_readme": "https://github.com/bioc/SpectraQL/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "BH",
    "BiocGenerics",
    "BiocParallel",
    "clue",
    "cluster",
    "codetools",
    "cpp11",
    "data.table",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "IRanges",
    "lambda.r",
    "MASS",
    "MetaboCoreUtils",
    "MsCoreUtils",
    "ProtGenerics",
    "Rcpp",
    "S4Vectors",
    "snow",
    "Spectra"
  ],
  "_vignettes": [
    {
      "source": "SpectraQL.Rmd",
      "filename": "SpectraQL.html",
      "title": "Mass Spec Query Language Support to the Spectra Package",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Extracting data from Spectra objects with MassQL",
        "MassQL definition",
        "Type of data",
        "Condition",
        "Filter",
        "Differences of the SpectraQL implementation to the MassQL definition",
        "Examples",
        "Filtering and subsetting",
        "Choosing which data to return",
        "Filtering peaks within spectra",
        "Session information"
      ],
      "created": "2022-01-19 09:01:28",
      "modified": "2026-02-06 07:54:00",
      "commits": 10
    }
  ],
  "_score": 5.477121254719663,
  "_indexed": false,
  "_nocasepkg": "spectraql",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/SpectraQL",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.6.0",
      "date": "2026-10-01T11:54:57.000Z",
      "distro": "resolute",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/cb3ac2ab7be926b6693bb963f74927abb2f2d6256c4d23f03aed9bc16d4dc9d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.6.0",
      "date": "2026-10-01T11:54:24.000Z",
      "distro": "resolute",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/e44569bc800388e593d00cba3c7c6b20c84ad09441fb25ed1897a37cec4d837c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.6.0",
      "date": "2026-10-01T12:07:27.000Z",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/95990c0f0c5a13d7c9813a0b6578ed1e8330f80dec8ff8572c2937ed71a43d81",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.6.0",
      "date": "2026-10-01T12:06:52.000Z",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/703dde2aa8c566a658d417a4ade603df0f014593e109bc14b2ffecb60e2faeb4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.6.0",
      "date": "2026-10-01T11:52:45.000Z",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/f978c2ff3d392388c93e7af52f7939f5ecd54714535461c9970c9061719df105",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.6.0",
      "date": "2026-10-01T11:51:29.000Z",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/52e61c713964783281d639dcb539d0b1e1a86a9ca40b5df63919d4ce406f67fc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.6.0",
      "date": "2026-10-01T11:51:27.000Z",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/591819aa2862c17b6433676ca250a637f256e4a8ad67bf5f58c5c09480be622c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.6.0",
      "date": "2026-10-01T11:51:28.000Z",
      "commit": "32f9d0b6306745ef40d8d09c40af4159dea8952a",
      "fileid": "https://r2.ropensci.org/b22ac752ffca96d7892b112fcd239e3bc256417456cc58adea8fcd3dcdaeae58",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36857267472"
    }
  ]
}