{
  "_id": "6aca1fa4fe5cc25786e84f1a",
  "Package": "TENxVisiumData",
  "Version": "1.20.0",
  "Title": "Visium spatial gene expression data by 10X Genomics",
  "Description": "Collection of Visium spatial gene expression datasets by\n10X Genomics, formatted into objects of class\nSpatialExperiment. Data cover various organisms and tissues,\nand include: single- and multi-section experiments, as well as\nsingle sections subjected to both whole transcriptome and\ntargeted panel analysis. Datasets may be used for testing of\nand as examples in packages, for tutorials and workflow\ndemonstrations, or similar purposes.",
  "Authors@R": "person(\n\"Helena L.\", \"Crowell\",\nemail = \"helena@crowell.eu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4801-1767\"))",
  "URL": "https://github.com/helenalc/TENxVisiumData",
  "BugReports": "https://github.com/helenalc/TENxVisiumData/issues",
  "biocViews": "ExperimentHub, ExpressionData, ExperimentData,\nHomo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch",
  "VignetteBuilder": "knitr",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "Config/pak/sysreqs": "libmagick++-dev gsfonts libicu-dev libpng-dev\nlibssl-dev zlib1g-dev",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:35:17 UTC",
  "RemoteUrl": "https://github.com/bioc/TENxVisiumData",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "73ea8b68839bbacd385f2ec35f5e17240eb91679",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 11:15:25 UTC",
    "User": "root"
  },
  "Author": "Helena L. Crowell [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-4801-1767>)",
  "Maintainer": "Helena L. Crowell <helena@crowell.eu>",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "TENxVisiumData_1.20.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/dd69c6434b4bad204c2c0c90a4b600ce98ea24f1b2cbc0253ec3d0bf679db261",
  "_filesize": 92937,
  "_sha256": "dd69c6434b4bad204c2c0c90a4b600ce98ea24f1b2cbc0253ec3d0bf679db261",
  "_expires": "2027-01-18T11:21:06.000Z",
  "_created": "2026-10-10T11:15:25.000Z",
  "_published": "2026-10-10T11:21:08.258Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047527440",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 6
  },
  "_upstream": "https://github.com/bioc/TENxVisiumData",
  "_commit": {
    "id": "73ea8b68839bbacd385f2ec35f5e17240eb91679",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379717
  },
  "_maintainer": {
    "name": "Helena L. Crowell",
    "email": "helena@crowell.eu",
    "login": "helenalc",
    "description": "",
    "uuid": 14542264,
    "orcid": "0000-0002-4801-1767"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114200767932,
      "time": 165,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11668122555"
    },
    {
      "job": 114200767908,
      "time": 278,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11668087984"
    },
    {
      "job": 114200767911,
      "time": 275,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11668461443"
    },
    {
      "job": 114200008375,
      "time": 263,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11668880596"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "ExperimentHub",
      "role": "Depends"
    },
    {
      "package": "SpatialExperiment",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.21.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.20.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "experimenthub",
    "expressiondata",
    "experimentdata",
    "homo_sapiens_data",
    "mus_musculus_data",
    "reproducibleresearch",
    "datapkg"
  ],
  "_stars": 8,
  "_contributors": [
    {
      "user": "catalyst-project",
      "count": 37,
      "uuid": 31732326
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/helenalc/tenxvisiumdata",
  "_searchresults": 28,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TENxVisiumData.html",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "HumanBreastCancerIDC",
    "HumanBreastCancerILC",
    "HumanCerebellum",
    "HumanColorectalCancer",
    "HumanGlioblastoma",
    "HumanHeart",
    "HumanLymphNode",
    "HumanOvarianCancer",
    "HumanSpinalCord",
    "MouseBrainCoronal",
    "MouseBrainSagittalAnterior",
    "MouseBrainSagittalPosterior",
    "MouseKidneyCoronal"
  ],
  "_help": [
    {
      "page": "TENxVisiumData",
      "title": "TENxVisiumData",
      "topics": [
        "HumanBreastCancerIDC",
        "HumanBreastCancerILC",
        "HumanCerebellum",
        "HumanColorectalCancer",
        "HumanGlioblastoma",
        "HumanHeart",
        "HumanLymphNode",
        "HumanOvarianCancer",
        "HumanSpinalCord",
        "MouseBrainCoronal",
        "MouseBrainSagittalAnterior",
        "MouseBrainSagittalPosterior",
        "MouseKidneyCoronal",
        "TENxVisiumData"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/TENxVisiumData/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "dplyr",
    "ExperimentHub",
    "fastmap",
    "filelock",
    "generics",
    "GenomicRanges",
    "glue",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lattice",
    "lifecycle",
    "magick",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rjson",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SingleCellExperiment",
    "SparseArray",
    "SpatialExperiment",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "vignette.Rmd",
      "filename": "vignette.html",
      "title": "TENxVisiumData",
      "author": "Helena L. Crowell",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Available datasets",
        "Loading the data",
        "Data representation",
        "Session information"
      ],
      "created": "2020-12-19 14:42:31",
      "modified": "2021-04-27 07:43:35",
      "commits": 6
    }
  ],
  "_score": 5.350248018334163,
  "_indexed": false,
  "_nocasepkg": "tenxvisiumdata",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/TENxVisiumData",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.20.0",
      "date": "2026-10-10T11:18:29.000Z",
      "distro": "resolute",
      "commit": "73ea8b68839bbacd385f2ec35f5e17240eb91679",
      "fileid": "https://r2.ropensci.org/fca50e37e8e58bb07a079703b56dfacbe4f84a704f49480e8d38e6a22b4fbccc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047527440"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.20.0",
      "date": "2026-10-10T11:18:36.000Z",
      "distro": "resolute",
      "commit": "73ea8b68839bbacd385f2ec35f5e17240eb91679",
      "fileid": "https://r2.ropensci.org/01f0f5602596ea3cfbdffd5cc612af424ffc9ef797f11e2264166fcdf1892a3c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047527440"
    }
  ]
}