{
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  "Title": "Quality control for target capture experiments",
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  "Author": "M. Hummel, S. Bonnin, E. Lowy, G. Roma",
  "Maintainer": "Sarah Bonnin <Sarah.Bonnin@crg.eu>",
  "Description": "Target capture experiments combine hybridization-based (in\nsolution or on microarrays) capture and enrichment of genomic\nregions of interest (e.g. the exome) with high throughput\nsequencing of the captured DNA fragments. This package provides\nfunctionalities for assessing and visualizing the quality of\nthe target enrichment process, like specificity and sensitivity\nof the capture, per-target read coverage and so on.",
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    "type": "organization",
    "name": "Bioconductor",
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    "insert.size.hist",
    "make.wigfiles",
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    "readsPerTarget",
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  "_help": [
    {
      "page": "chrom.barplot",
      "title": "Reads per chromosome barplot",
      "topics": [
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    {
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      "topics": [
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      "title": "Coverage density plot",
      "topics": [
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      ]
    },
    {
      "page": "coverage.GC",
      "title": "Bait coverage versus GC content plot",
      "topics": [
        "coverage.GC"
      ]
    },
    {
      "page": "coverage.hist",
      "title": "Coverage histogram",
      "topics": [
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      ]
    },
    {
      "page": "coverage.plot",
      "title": "Coverage versus base position plot",
      "topics": [
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      ]
    },
    {
      "page": "coverage.target",
      "title": "Calculates read coverage",
      "topics": [
        "coverage.target"
      ]
    },
    {
      "page": "coverage.targetlength.plot",
      "title": "Number of reads or average coverage versus target length scatter plot",
      "topics": [
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      ]
    },
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      "page": "coverage.uniformity",
      "title": "Coverage uniformity plot",
      "topics": [
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    },
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      "page": "covered.k",
      "title": "Target capture sensitivity",
      "topics": [
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      ]
    },
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      "title": "Read duplicates barplot",
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      "title": "Target capture specificity",
      "topics": [
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      "title": "Fraction of the target within the genome",
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    },
    {
      "page": "get.baits",
      "title": "Read capture hybridization probe positions",
      "topics": [
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    {
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      "title": "Read capture target positions",
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      "topics": [
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