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  "Type": "Package",
  "Title": "Toolbox for mRNA epigenetics sequencing analysis",
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  "Authors@R": "c(person(given = \"Zhenxing\",\nfamily = \"Guo\",\nrole = c(\"aut\", \"cre\"),\nemail = \"guozhenxing@cuhk.edu.cn\"),\nperson(given = \"Hao\",\nfamily = \"Wu\",\nrole = \"ctb\"))",
  "Description": "This package is devoted to analyzing MeRIP-seq data.\nCurrent functionalities include 1. detect transcriptome wide\nm6A methylation regions 2. detect transcriptome wide\ndifferential m6A methylation regions.",
  "biocViews": "Epigenetics, RNASeq, PeakDetection, DifferentialMethylation",
  "License": "GPL-3 + file LICENSE",
  "Encoding": "UTF-8",
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  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:10 UTC",
  "RemoteUrl": "https://github.com/bioc/TRESS",
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    "User": "root"
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  "Author": "Zhenxing Guo [aut, cre],\nHao Wu [ctb]",
  "Maintainer": "Zhenxing Guo <guozhenxing@cuhk.edu.cn>",
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  "_selfowned": false,
  "_usedby": 1,
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "CallPeaks.oneRep",
    "CallPeaks.paramEsti",
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    "ShowOnePeak",
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    "TRESS_DMRtest",
    "TRESS_peak"
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      "page": "Basal",
      "title": "Bin-level and region-level data from basal mouse brain samples",
      "topics": [
        "Basal"
      ]
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    {
      "page": "CallCandidates",
      "title": "Call candidate m6A regions or candidate differential m6A regions.",
      "topics": [
        "CallCandidates"
      ]
    },
    {
      "page": "CallDMRs.paramEsti",
      "title": "Model fitting and parameter estimation by TRESS for each candidate DMR.",
      "topics": [
        "CallDMRs.paramEsti"
      ]
    },
    {
      "page": "CallPeaks.multiRep",
      "title": "m6A peak calling with multiple replicates.",
      "topics": [
        "CallPeaks.multiRep"
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    },
    {
      "page": "CallPeaks.oneRep",
      "title": "m6A peak calling with only one replicate.",
      "topics": [
        "CallPeaks.oneRep"
      ]
    },
    {
      "page": "CallPeaks.paramEsti",
      "title": "Parameter estimation in m6A peak calling with multiple replicates.",
      "topics": [
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      "title": "Obtain the name of each coefficient in design matrix.",
      "topics": [
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    },
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      "topics": [
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      "topics": [
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      "topics": [
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    },
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      "title": "Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing.",
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