{
  "_id": "6aca1cccfe5cc25786e84c82",
  "Package": "TargetScoreData",
  "Title": "TargetScoreData",
  "Version": "1.48.0",
  "Author": "Yue Li",
  "Maintainer": "Yue Li <yueli@cs.toronto.edu>",
  "Description": "Precompiled and processed miRNA-overexpression\nfold-changes from 84 Gene Expression Omnibus (GEO) series\ncorresponding to 6 platforms, 77 human cells or tissues, and\n113 distinct miRNAs. Accompanied with the data, we also\nincluded in this package the sequence feature scores from\nTargetScanHuman 6.1 including the context+ score and the\nprobabilities of conserved targeting for each miRNA-mRNA\ninteraction. Thus, the user can use these static sequence-based\nscores together with user-supplied tissue/cell-specific\nfold-change due to miRNA overexpression to predict miRNA\ntargets using the package TargetScore (download separately)",
  "biocViews": "ExperimentData, RNASeqData, miRNAData",
  "License": "GPL-2",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:26:01 UTC",
  "RemoteUrl": "https://github.com/bioc/TargetScoreData",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "8de45d065ebfa288251975780b1197f22ccd1e31",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 11:04:30 UTC",
    "User": "root"
  },
  "_user": "bioc-release",
  "_type": "src",
  "_file": "TargetScoreData_1.48.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/0608f8c56d2427db5b4d354b5b566355ab2254997888fe165298df793f9b4ae3",
  "_filesize": 216288894,
  "_sha256": "0608f8c56d2427db5b4d354b5b566355ab2254997888fe165298df793f9b4ae3",
  "_expires": "2027-01-18T11:08:51.000Z",
  "_created": "2026-10-10T11:04:30.000Z",
  "_published": "2026-10-10T11:08:59.899Z",
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046960817",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 3,
    "warning": 4,
    "note": 9
  },
  "_upstream": "https://github.com/bioc/TargetScoreData",
  "_commit": {
    "id": "8de45d065ebfa288251975780b1197f22ccd1e31",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379161
  },
  "_maintainer": {
    "name": "Yue Li",
    "email": "yueli@cs.toronto.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114198933269,
      "time": 151,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11667891755"
    },
    {
      "job": 114198933242,
      "time": 173,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11668660271"
    },
    {
      "job": 114198933303,
      "time": 175,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11668505524"
    },
    {
      "job": 114198375730,
      "time": 191,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11666814997"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "TargetScore",
      "role": "Suggests"
    },
    {
      "package": "gplots",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.49.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.48.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "experimentdata",
    "rnaseqdata",
    "mirnadata",
    "datapkg"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 3,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/TargetScoreData.html"
  ],
  "_cranurl": false,
  "_exports": [
    "get_miRNA_family_info",
    "get_miRNA_transfection_data",
    "get_precomputed_logFC",
    "get_precomputed_targetScores",
    "get_TargetScanHuman_contextScore",
    "get_TargetScanHuman_PCT",
    "get_validated_targets"
  ],
  "_help": [
    {
      "page": "TargetScoreData-package",
      "title": "Processed human microRNA perturbation data from GEO, and sequence information from TargetScan, and targetScore from TargetScore",
      "topics": [
        "TargetScoreData-package",
        "TargetScoreData"
      ]
    },
    {
      "page": "get_miRNA_family_info",
      "title": "MicroRNA family information",
      "topics": [
        "get_miRNA_family_info"
      ]
    },
    {
      "page": "get_miRNA_transfection_data",
      "title": "get_miRNA_transfection_data",
      "topics": [
        "get_miRNA_transfection_data"
      ]
    },
    {
      "page": "get_precomputed_logFC",
      "title": "get_precomputed_logFC",
      "topics": [
        "get_precomputed_logFC"
      ]
    },
    {
      "page": "get_precomputed_targetScores",
      "title": "get_precomputed_targetScores",
      "topics": [
        "get_precomputed_targetScores"
      ]
    },
    {
      "page": "get_TargetScanHuman_contextScore",
      "title": "get_TargetScanHuman_contextScore",
      "topics": [
        "get_TargetScanHuman_contextScore"
      ]
    },
    {
      "page": "get_TargetScanHuman_PCT",
      "title": "get_TargetScanHuman_PCT",
      "topics": [
        "get_TargetScanHuman_PCT"
      ]
    },
    {
      "page": "get_validated_targets",
      "title": "get_validated_targets",
      "topics": [
        "get_validated_targets"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "TargetScoreData.Rnw",
      "filename": "TargetScoreData.pdf",
      "title": "Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore",
      "engine": "utils::Sweave",
      "headings": [
        "MicroRNA perturbation datasets",
        "TargetScan context score and PCT",
        "TargetScore",
        "Session Info"
      ],
      "created": "2013-11-01 20:36:05",
      "modified": "2013-11-01 20:36:05",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": false,
  "_nocasepkg": "targetscoredata",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/TargetScoreData",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.48.0",
      "date": "2026-10-10T11:07:46.000Z",
      "distro": "resolute",
      "commit": "8de45d065ebfa288251975780b1197f22ccd1e31",
      "fileid": "https://r2.ropensci.org/0231fc5f746064a63357197540bda57d0e73a130683c38dab551de3820eec571",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046960817"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.48.0",
      "date": "2026-10-10T11:07:41.000Z",
      "distro": "resolute",
      "commit": "8de45d065ebfa288251975780b1197f22ccd1e31",
      "fileid": "https://r2.ropensci.org/9d8b18c40e3c8a14cbfa3cb3fbd1bf8593ba4a4831bf343cfeb5762e90b45e21",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38046960817"
    }
  ]
}