{ "_id": "6a197d15acfb0bcc41df6d42", "Package": "UniProt.ws", "Type": "Package", "Title": "R Interface to UniProt Web Services", "Version": "2.52.0", "Description": "The Universal Protein Resource (UniProt) is a\ncomprehensive resource for protein sequence and annotation\ndata. This package provides a collection of functions for\nretrieving, processing, and re-packaging UniProt web services.\nThe package makes use of UniProt's modernized REST API and\nallows mapping of identifiers accross different databases.", "Authors@R": "c(\nperson(\"Marc\", \"Carlson\", , \"maintainer@bioconductor.org\", \"aut\"),\nperson(\"Csaba\", \"Ortutay\", role=\"ctb\"),\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\",\"cre\"), c(ORCID = \"0000-0002-3242-0582\"))\n)", "Collate": "UniProt.ws-package.R UniProt.ws-class.R mapUniProt.R\nUniProt.ws-methods.R utilities.R", "License": "Artistic-2.0", "biocViews": "Annotation, Infrastructure, GO, KEGG, BioCarta", "BugReports": "https://github.com/Bioconductor/UniProt.ws/issues", "URL": "https://github.com/Bioconductor/UniProt.ws", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Date": "2026-02-04", "RoxygenNote": "7.3.3", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:37:04 UTC", "RemoteUrl": "https://github.com/bioc/UniProt.ws", "RemoteRef": "RELEASE_3_23", "RemoteSha": "23a0bb32e76da08ec2044e631a4428d343f22347", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 09:18:42 UTC", "User": "root" }, "Author": "Marc Carlson [aut],\nCsaba Ortutay [ctb],\nMarcel Ramos [aut, cre] (ORCID:\n)", "Maintainer": "Marcel Ramos ", "MD5sum": "bbd5474c5fae4c52a9102238c10f54dd", "_user": "bioc-release", "_type": "src", "_file": "UniProt.ws_2.52.0.tar.gz", "_fileid": "c0f0e1d1c55668340d971b88676d1639684685c3fda33c16354c43439213d8d9", "_filesize": 145987, "_sha256": "c0f0e1d1c55668340d971b88676d1639684685c3fda33c16354c43439213d8d9", "_created": "2026-05-29T09:18:42.000Z", "_published": "2026-05-29T11:48:37.923Z", "_jobs": [ { "job": 78473081786, "time": 158, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7287385390" }, { "job": 78473081829, "time": 268, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7287420828" }, { "job": 78473081785, "time": 264, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7287418886" }, { "job": 78473081792, "time": 194, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7289929665" }, { "job": 78473081778, "time": 160, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7289925904" }, { "job": 78472575338, "time": 203, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7287334036" }, { "job": 78473081777, "time": 118, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7287372367" }, { "job": 78473081797, "time": 212, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7287403236" }, { "job": 78473081804, "time": 183, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7287393649" }, { "job": 78473081803, "time": 190, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7287395855" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 6 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/UniProt.ws", "_commit": { "id": "23a0bb32e76da08ec2044e631a4428d343f22347", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379824 }, "_maintainer": { "name": "Marcel Ramos", "email": "marcel.ramos@sph.cuny.edu", "login": "link-ny", "bluesky": "@mramos148.bsky.social", "linkedin": "in/mramos148", "orcid": "0000-0002-3242-0582", "twitter": "@M2RuseR", "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member / \nR 📦 dev ", "uuid": 4392950 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "AnnotationDbi", "role": "Imports" }, { "package": "BiocFileCache", "role": "Imports" }, { "package": "BiocBaseUtils", "role": "Imports" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "progress", "role": "Imports" }, { "package": "rjsoncons", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 6, "_updates": [ { "week": "2025-22", "n": 3 }, { "week": "2025-38", "n": 2 }, { "week": "2025-44", "n": 2 }, { "week": "2026-06", "n": 3 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "2.53.0", "bioc": "3.24" }, { "branch": "release", "version": "2.52.0", "bioc": "3.23" } ], "_topics": [ "annotation", "infrastructure", "go", "kegg", "biocarta", "bioconductor-package", "core-package" ], "_stars": 10, "_contributors": [ { "user": "link-ny", "count": 49, "uuid": 4392950 }, { "user": "mtmorgan", "count": 19, "uuid": 118552 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "dtenenba", "count": 14, "uuid": 2286826 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "lshep", "count": 4, "uuid": 18724380 }, { "user": "jmacdon", "count": 4, "uuid": 5940924 }, { "user": "dvantwisk", "count": 2, "uuid": 10927671 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "sonali-bioc", "count": 1, "uuid": 6373953 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 1134, "source": "https://www.bioconductor.org/packages/stats/bioc/UniProt.ws" }, "_devurl": "https://github.com/bioconductor/uniprot.ws", "_searchresults": 209, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/UniProt.ws.html", "manual.pdf" ], "_homeurl": "https://github.com/bioconductor/uniprot.ws", "_realowner": "bioc", "_cranurl": false, "_exports": [ "allFromKeys", "allToKeys", "availableUniprotSpecies", "columns", "keys", "keytypes", "lookupUniprotSpeciesFromTaxId", "mapUniProt", "queryUniProt", "returnFields", "select", "show", "species", "taxId", "taxId<-", "taxname2domain", "taxname2species", "taxname2taxid", "UniProt.ws" ], "_help": [ { "page": "mapUniProt", "title": "Mapping identifiers with the UniProt API", "topics": [ "allFromKeys", "allToKeys", "mapUniProt", "queryUniProt", "returnFields" ] }, { "page": "UniProt.ws-class", "title": "UniProt.ws objects and their related methods and functions", "topics": [ ".UniProt.ws", "availableUniprotSpecies", "lookupUniprotSpeciesFromTaxId", "show,UniProt.ws-method", "species,UniProt.ws-method", "taxId", "taxId,UniProt.ws-method", "taxId<-", "taxId<-,UniProt.ws-method", "UniProt.ws", "UniProt.ws-class" ] }, { "page": "UniProt.ws-methods", "title": "UniProt.ws methods from AnnotationDbi", "topics": [ "columns,UniProt.ws-method", "keys,UniProt.ws-method", "keytypes,UniProt.ws-method", "select,UniProt.ws-method", "UniProt.ws-methods" ] }, { "page": "utilities", "title": "Translate UniProt taxon names to scientific names, taxids, or domain codes", "topics": [ "taxname2domain", "taxname2species", "taxname2taxid", "utilities" ] } ], "_readme": "https://github.com/bioc/UniProt.ws/raw/RELEASE_3_23/README.md", "_rundeps": [ "AnnotationDbi", "askpass", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "dbplyr", "dplyr", "fastmap", "filelock", "generics", "glue", "hms", "httr", "httr2", "IRanges", "jsonlite", "KEGGREST", "lifecycle", "magrittr", "memoise", "mime", "openssl", "pillar", "pkgconfig", "png", "prettyunits", "progress", "purrr", "R6", "rappdirs", "rjsoncons", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "XVector" ], "_vignettes": [ { "source": "UniProt.ws.Rmd", "filename": "UniProt.ws.html", "title": "UniProt.ws: A package for retrieving data from the UniProt web service", "author": "Marc Carlson", "engine": "knitr::rmarkdown", "headings": [ "UniProt.ws", "Configuring UniProt.ws", "Using UniProt.ws", "sessionInfo()" ], "created": "2022-12-14 18:12:35", "modified": "2025-01-02 03:25:25", "commits": 4 } ], "_score": 9.027971854443287, "_indexed": false, "_nocasepkg": "uniprot.ws", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/UniProt.ws", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.52.0", "date": "2026-05-29T09:21:32.000Z", "distro": "noble", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "35b79feb1d6e9c91d177dc4ff263bb484129558452a2018114c3a26555b0f2d8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" }, { "r": "4.6.0", "os": "linux", "version": "2.52.0", "date": "2026-05-29T09:21:27.000Z", "distro": "noble", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "c804846a8d5e9c63c880d591447938b2d0030312750f2bbe298c3282693cabb5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" }, { "r": "4.5.3", "os": "mac", "version": "2.52.0", "date": "2026-05-29T11:46:37.000Z", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "1ad54a3c188a369db9600ac7d83237de629c741175f0303e7a8eb3a72086b80c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" }, { "r": "4.6.0", "os": "mac", "version": "2.52.0", "date": "2026-05-29T11:46:34.000Z", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "ef83b79782b8a82d685abccddbddb80179795acecec8b3cfab24e006ea776b84", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" }, { "r": "4.6.0", "os": "wasm", "version": "2.52.0", "date": "2026-05-29T09:21:04.000Z", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "65bd1ba7aba9eb62bf46aee4c427f283cb6f9b52c06012f8d9fb3d79838a05b2", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" }, { "r": "4.7.0", "os": "win", "version": "2.52.0", "date": "2026-05-29T09:20:28.000Z", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "1830e360d269a1780c292fb4c00557a6866ad3df933310787583e37d6aa51f09", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" }, { "r": "4.5.3", "os": "win", "version": "2.52.0", "date": "2026-05-29T09:20:06.000Z", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "6999c9ee4e39c30c1d5c544ef100831db751c4959dcd6f7c98dad4808418372e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" }, { "r": "4.6.0", "os": "win", "version": "2.52.0", "date": "2026-05-29T09:20:10.000Z", "commit": "23a0bb32e76da08ec2044e631a4428d343f22347", "fileid": "c18c1af74e1770fb6fcb71a406f22f8f93352d6a56832f188547c8c70fd6efe2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26628918425" } ] }