{ "_id": "6a1b07d01d7bb097a0a04bba", "Package": "VDJdive", "Title": "Analysis Tools for 10X V(D)J Data", "Version": "1.14.0", "Authors@R": "c(\nperson(\"Kelly\", \"Street\", role = c(\"aut\", \"cre\"), email = \"street.kelly@gmail.com\", comment = c(ORCID = \"0000-0001-6379-5013\")),\nperson(\"Mercedeh\", \"Movassagh\", role = \"aut\", email = \"mercedeh@ds.dfci.harvard.edu\", comment = c(ORCID = \"0000-0001-7690-0230\")),\nperson(\"Jill\", \"Lundell\", role = \"aut\", email = \"jflundell@gmail.com\", comment = c(ORCID = \"0000-0002-6048-4700\")),\nperson(\"Jared\", \"Brown\", role = \"ctb\"),\nperson(\"Linglin\", \"Huang\", role = \"ctb\"),\nperson(\"Mingzhi\", \"Ye\", role = \"ctb\"))", "Description": "This package provides functions for handling and analyzing\nimmune receptor repertoire data, such as produced by the\nCellRanger V(D)J pipeline. This includes reading the data into\nR, merging it with paired single-cell data, quantifying\nclonotype abundances, calculating diversity metrics, and\nproducing common plots. It implements the E-M Algorithm for\nclonotype assignment, along with other methods, which makes use\nof ambiguous cells for improved quantification.", "License": "Artistic-2.0", "URL": "https://github.com/kstreet13/VDJdive", "BugReports": "https://github.com/kstreet13/VDJdive/issues", "biocViews": "Software, ImmunoOncology, SingleCell, Annotation, RNASeq,\nTargetedResequencing", "Encoding": "UTF-8", "LazyData": "false", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "StagedInstall": "no", "VignetteBuilder": "knitr", "Collate": "'RcppExports.R' 'clonoStats_class.R' 'abundanceVDJ.R'\n'barVDJ.R' 'boxVDJ.R' 'calculateDiversity.R'\n'clonoStats_helpers.R' 'clonoStats.R' 'contigs.R' 'pieVDJ.R'\n'runBreakaway.R' 'runVDJPCA.R' 'scatterVDJ.R' 'setup.R'\n'utils.R'", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:58:56 UTC", "RemoteUrl": "https://github.com/bioc/VDJdive", "RemoteRef": "RELEASE_3_23", 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