{
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  "Package": "VariantExperiment",
  "Title": "A RangedSummarizedExperiment Container for VCF/GDS Data with GDS\nBackend",
  "Version": "1.26.0",
  "Authors@R": "c(\nperson(\n\"Qian\", \"Liu\", email = \"Qian.Liu@roswellpark.org\", role=c(\"aut\", \"cre\")\n),\nperson(\"Hervé\",  \"Pagès\", role = \"aut\"),\nperson(\"Martin\", \"Morgan\", role = \"aut\"))",
  "Description": "VariantExperiment is a Bioconductor package for saving\ndata in VCF/GDS format into RangedSummarizedExperiment object.\nThe high-throughput genetic/genomic data are saved in GDSArray\nobjects. The annotation data for features/samples are saved in\nDelayedDataFrame format with mono-dimensional GDSArray in each\ncolumn. The on-disk representation of both assay data and\nannotation data achieves on-disk reading and processing and\nsaves memory space significantly. The interface of\nRangedSummarizedExperiment data format enables easy and common\nmanipulations for high-throughput genetic/genomic data with\ncommon SummarizedExperiment metaphor in R and Bioconductor.",
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  "License": "GPL-3",
  "Encoding": "UTF-8",
  "URL": "https://github.com/Bioconductor/VariantExperiment",
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  "Date/Publication": "2026-04-28 12:50:44 UTC",
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    "User": "root"
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  "Author": "Qian Liu [aut, cre],\nHervé Pagès [aut],\nMartin Morgan [aut]",
  "Maintainer": "Qian Liu <Qian.Liu@roswellpark.org>",
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    "description": "Assistant Professor in Department of Biostats & Bioinfo\nAlumni @Bioconductor Core Team",
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    "makeVariantExperimentFromGDS",
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    "makeVariantExperimentFromVCF",
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    {
      "page": "VariantExperiment-package",
      "title": "VariantExperiment: A package to represent VCF / GDS files using standard SummarizedExperiment metaphor with on-disk representation.",
      "topics": [
        "VariantExperiment-package"
      ]
    },
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      "page": "loadVariantExperiment",
      "title": "loadVariantExperiment to load the GDS back-end SummarizedExperiment object into R console.",
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        "loadVariantExperiment"
      ]
    },
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      "page": "makeVariantExperimentFromGDS",
      "title": "makeVariantExperimentFromGDS",
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        "makeVariantExperimentFromSEQGDS",
        "makeVariantExperimentFromSNPGDS"
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      "topics": [
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      ]
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      "title": "saveVariantExperiment Save all the assays in GDS format, including in-memory assays. Delayed assays with delayed operations on them are realized while they are written to disk.",
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        "VariantExperiment",
        "VariantExperiment-class"
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      "title": "VariantExperiment: A RangedSummarizedExperiment Container for Large-Scale Variant Data with GDS Backend",
      "engine": "knitr::rmarkdown",
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        "Installation",
        "Background",
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        "DelayedDataFrame",
        "VariantExperiment class",
        "slot accessors",
        "Coercion methods",
        "From VCF to VariantExperiment",
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