{ "_id": "6a1b04ed1d7bb097a0a02c26", "Package": "VennDetail", "Type": "Package", "Title": "Comprehensive Visualization and Analysis of Multi-Set\nIntersections", "Version": "1.28.0", "Date": "2025-07-01", "Authors@R": "c(\nperson(\"Kai\", \"Guo\", email = \"guokai8@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Brett\", \"McGregor\", role = \"aut\"),\nperson(\"James\", \"Porter\", role = \"aut\"),\nperson(\"Junguk\", \"Hur\", role = \"aut\")\n)", "Description": "A comprehensive package for visualizing multi-set\nintersections and extracting detailed subset information.\nVennDetail generates high-resolution visualizations including\ntraditional Venn diagrams, Venn-pie plots, and UpSet-style\nplots. It provides functions to extract and combine subset\ndetails with user datasets in various formats. The package is\nparticularly useful for bioinformatics applications but can be\nused for any multi-set analysis.", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "VignetteBuilder": "knitr", "URL": "https://github.com/guokai8/VennDetail", "BugReports": "https://github.com/guokai8/VennDetail/issues", "Roxygen": "list(roclets = c(\"namespace\", \"rd\"))", "RoxygenNote": "7.3.3", "biocViews": "DataRepresentation, GraphAndNetwork, Visualization, Software", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nzlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:50:19 UTC", "RemoteUrl": "https://github.com/bioc/VennDetail", "RemoteRef": "RELEASE_3_23", "RemoteSha": "0a8f47dcd15725de702dc54b925691988cd61b5b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 10:50:17 UTC", "User": "root" }, "Author": "Kai Guo [aut, cre],\nBrett McGregor [aut],\nJames Porter [aut],\nJunguk Hur [aut]", "Maintainer": "Kai Guo 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"extract", "venndiagram" ], "_stars": 30, "_contributors": [ { "user": "guokai8", "count": 294, "uuid": 9088155 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jwokaty", "count": 13, "uuid": 1744257 }, { "user": "mtmorgan", "count": 2, "uuid": 118552 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 434, "source": "https://www.bioconductor.org/packages/stats/bioc/VennDetail" }, "_mentions": 3, "_devurl": "https://github.com/guokai8/venndetail", "_searchresults": 117, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/VennDetail.html", "manual.pdf" ], "_homeurl": "https://github.com/guokai8/venndetail", "_realowner": "bioc", "_cranurl": false, "_exports": [ "compareVenn", "create_interactive_vennpie", "detail", "dplot", "getFeature", "getSet", "loadVenn", "make_subset", "make.subset", "newVenn", "result", "rowjoin", "saveVenn", "setcolor", "upset_plot", "upsetPlot", "vennApp", "venndetail", "vennDiagram", "vennEnrichment", "vennpie", "vennStats" ], "_datasets": [ { "name": "T2DM", "title": "T2DM Dataset", "object": "T2DM", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "VennDetail-package", "title": "VennDetail: Comprehensive Visualization and Analysis of Multi-Set Intersections", "topics": [ "VennDetail-package", "VennDetail" ] }, { "page": "dot-add_colnames", "title": "Give first colname as RowNxyz", "topics": [ ".add_colnames" ] }, { "page": "dot-make.table", "title": "make table for venndetail modified from make.truth.table (VennDiagram)", "topics": [ ".make.table" ] }, { "page": "sub-.Venn", "title": "Subset a Venn object", "topics": [ "[.Venn" ] }, { "page": "cash-.Venn", "title": "Extract column from a Venn object", "topics": [ "$.Venn" ] }, { "page": "as.data.frame.Venn", "title": "Utility functions for VennDetail package", "topics": [ "as.data.frame.Venn" ] }, { "page": "compareVenn", "title": "Compare two Venn objects", "topics": [ "compareVenn" ] }, { "page": "create_interactive_vennpie", "title": "Create an interactive vennpie chart with plotly", "topics": [ "create_interactive_vennpie" ] }, { "page": "detail", "title": "Get subset details from a Venn object", "topics": [ "detail", "detail,Venn-method" ] }, { "page": "dim.Venn", "title": "Get dimensions of a Venn object", "topics": [ "dim.Venn" ] }, { "page": "dplot", "title": "Create a bar plot of subset counts", "topics": [ "dplot", "dplot,Venn-method" ] }, { "page": "getFeature", "title": "Extract feature data for specific subsets", "topics": [ "getFeature", "getFeature,Venn-method" ] }, { "page": "getSet", "title": "Extract specific subsets from a Venn object", "topics": [ "getSet", "getSet,Venn-method" ] }, { "page": "head.Venn", "title": "Return the first or last parts of a Venn object", "topics": [ "head.Venn", "tail.Venn" ] }, { "page": "loadVenn", "title": "Load a Venn object from a file", "topics": [ "loadVenn" ] }, { "page": "make_subset", "title": "Create subsets from a list of sets", "topics": [ "make_subset" ] }, { "page": "make.subset", "title": "Get subset from list of input groups", "topics": [ "make.subset" ] }, { "page": "merge", "title": "Merge two or more venndetail obejcts", "topics": [ "merge.Venn" ] }, { "page": "names.Venn", "title": "Extract subset names from a Venn object", "topics": [ "names.Venn" ] }, { "page": "newVenn", "title": "Create a new Venn object", "topics": [ "newVenn" ] }, { "page": "plot.Venn", "title": "Plot a Venn object", "topics": [ "plot.Venn" ] }, { "page": "print.upset_grob", "title": "Print method for upset_grob objects", "topics": [ "print.upset_grob" ] }, { "page": "result", "title": "Extract results from a Venn object", "topics": [ "result", "result,Venn-method" ] }, { "page": "rowjoin", "title": "Join data.frames by row names or specified columns", "topics": [ "rowjoin", "rowjoin,data.frame,data.frame-method" ] }, { "page": "saveVenn", "title": "Save a Venn object to a file", "topics": [ "saveVenn" ] }, { "page": "setcolor", "title": "return colors with given a vector", "topics": [ "setcolor" ] }, { "page": "show", "title": "Show the summary of venn object", "topics": [ "show Venn", "show,Venn-method" ] }, { "page": "summary", "title": "Give summary information of Venn object", "topics": [ "summary.Venn" ] }, { "page": "T2DM", "title": "T2DM Dataset", "topics": [ "T2DM" ] }, { "page": "upset_plot", "title": "Create an UpSet plot for set intersection visualization", "topics": [ "upset_plot" ] }, { "page": "upsetPlot", "title": "Create an UpSet plot", "topics": [ "upsetPlot" ] }, { "page": "upsetPlot-Venn-method", "title": "Create an UpSet plot for a Venn object", "topics": [ 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